Orcinus orca (killer whale): 101273793
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Entry
101273793 CDS
T05247
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03013
Nucleocytoplasmic transport
oor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101273793 (UPF1)
03015 mRNA surveillance pathway
101273793 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101273793 (UPF1)
Enzymes [BR:
oor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101273793 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101273793 (UPF1)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101273793 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101273793 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101273793
NCBI-ProteinID:
XP_004277569
LinkDB
All DBs
Position
3:complement(11150880..11187141)
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AA seq
1116 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGP
LNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQT
HDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQK
NRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSY
LGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtgggcctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagtctcaaggacatt
aactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggacctcgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacattttcggtcctctggtcaagctggaggctgactatgataagaaactgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctgacatgcggctcatgcaaggggatgagata
tgcctgcggtacaaaggggacctggcgcccctgtggaaagggatcggccacgtcatcaag
gtccctgataattatggcgatgagatcgctattgagcttcggagcagtgtgggtgcaccc
gtggaggtgactcataacttccaggtggatttcgtgtggaagtcaacctcattcgacagg
atgcagagtgcgttgaaaacctttgctgtggacgagacctccgtgtcgggctacatctac
cacaaacttctcggccacgaagtggaggatgtgatcatcaagtgccagctgcccaaacgc
ttcacggcgcaggggctccctgacctcaaccactctcaggtttacgccgtgaagactgtg
ctgcagagaccactgagtctgatccagggcccaccgggcacaggaaagacggtgacctca
gccaccattgtctaccacctggctcggcaaggcaatgggcccgtgcttgtctgtgctcca
agcaacatagccgtggatcagctgactgagaagatccaccagactgggctgaaagtcgtg
cggctctgtgccaagagccgagaggccatcgattccccggtgtcgttcttggccctgcac
aaccagatcaggaacatggacagcatgccggagctccagaagctgcagcagctgaaggat
gagactggcgagctgtcgtctgcggatgaaaagcgataccgggccctgaagcgcactgcc
gagagggagctgctcatgaatgcagatgtcatctgctgcacgtgtgtgggcgccggggac
ccgaggctcgccaagatgcagttccgatccattttaatcgacgagagcacccaggccacc
gagccagagtgcatggtccctgtggtccttggagccaagcagctgatcctcgtgggcgac
cactgccagctgggccccgtggtgatgtgcaagaaggcggccaaggccgggctgtcccag
tcgctctttgagcgcctggtggtgctgggcatccgtcccatccgcctgcaggtccagtat
cggatgcatcctgcgctcagtgccttcccatccaacatcttctatgagggctctcttcag
aatggtgtcactgcagcggatcgtgtgaagaaggggtttgacttccagtggccccaaccg
gataaaccgatgttcttctacgtgacccagggccaagaggagattgccagctcaggcacc
tcctacctaaacaggacggaggctgcaaatgtggagaagatcaccacgaagctgctgaag
gcgggcgccaagccagaccagatcggcatcatcacgccctatgagggccagcgctcctac
ctggtgcagtacatgcagttcagtggctccctgcacaccaagctctaccaggaggtggag
atcgccagcgtggatgcgttccagggccgcgagaaggacttcatcatcctttcctgtgtg
cgggcgaatgagcaccaaggcattggatttttaaacgaccccaggagacttaatgtggcc
ttgaccagagcacgatatggggtcattattgtgggcaacccaaaggccctgtccaagcag
ccgctctggaaccacctgctgaactactacaaggagcagaaggtgctggtggaggggccg
ctgaacaacctgcgggagagcctcatgcagttcagcaagcccaggaagctggtcaacacc
atcaacccgggagcccgcttcatgacaacagccatgtatgatgcccgggaggccatcatc
ccaggatccgtctatgaccggagcagccagggccggccctcgaacatgtacttccagacc
catgaccagattggcatgatcagtgctggccccagccacgtggctgccatgaacattccc
atcccattcaacctggtcatgccgcccatgccgccaccggggtattttggacaagctaat
gggccagccgcaggccggggcaccccaaaaggcaagactggtcgtgggggacgccagaag
aaccgctttgggcttcctgggcccagccagacgaatctccccaatagccaggccagccag
gatgtggcgtcacagcccttctcacagggcgctctgacccagggctacatctccatgagc
cagccctcccagatgagccagcccggcctctcccagcctgagctgtcccaggacagttac
cttggagatgagtttaagtcacagattgatgtggcgctgtcgcaagactccacgtaccag
ggggagcgggcataccagcacggcggagtgacggggctgtcccagtattag
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integrated database retrieval system
