Orcinus orca (killer whale): 101277965
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Entry
101277965 CDS
T05247
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101277965 (SCAF4)
03041 Spliceosome [BR:
oor03041
]
101277965 (SCAF4)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101277965 (SCAF4)
Spliceosome [BR:
oor03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
101277965 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
101277965
NCBI-ProteinID:
XP_012394659
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All DBs
Position
5:complement(136121035..136177465)
Genome browser
AA seq
1144 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVTENVTNNEGSPPPPVKVSSEPSQATTNSIPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPQPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAAAAAAAAAAAAATAAAAAA
TTAPAAAVAPPASAAAVPSVAATAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMAI
QQDPVHHQVPLPPNGQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQTSFQAQSEPLTQK
AHQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRSGSRTRRSRHRRSRSRSRDR
RRHSPRSRSQERRDREKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLE
EFGPIESINMIPPRGCAYIVMVHRQDANRALQKLSRGNYKVNQKSIKIAWALNKGIKADY
KQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAET
SHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPP
GFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPINIPNSTIA
GINEDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLL
GTQGVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLPRFPLMPPRPMPPHMMHRGPPPGP
GGFGMPPPHGMKGPFPPHGPFVRPGGVPGLGGPGPGPGGPEDRDGRQPQQQQQQPPPAPQ
AQQQPPTQPPQPPPTQPQPFRNDNRQQFTSGRDQERFGRRSFGNRVENDRERYGNRNDDR
ENSNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEKPEV
TDRAGGNKTVEPPISQVGNVDTVSELDKGESESAVVKPSEELPAEATSSVEPEKDSGSAA
EAPR
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaagagctcttttcacttatggatatgaagcctccc
atctctcgagccaagatgattctcatcacgaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatagtggaaaagttcatcaaaaagtgtaaaccagaatacaaggtt
ccgggattatatgtaatcgactcaattgtgagacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttgtat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtattcaaaattgaaatcattcaaccgcttttggacatggcagcaggaaccagtaat
gccgccccagtaacagaaaatgttactaataatgaaggttcacctccacctccagttaaa
gtttcttctgaaccctcacaagccactacaaactccataccaactgtaccacagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgccattgacaat
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagctgctttcccccaacctgaacaaaaaactgcatttgacaagaagcta
cttgatagatttgattacgatgatgagccggaagctgtggaagaatcgaagaaggaagat
gctgcggccgctgctgccgccgccgccgccgctgctgcgaccgccgctgccgccgctgcc
accacagcacctgctgctgctgttgcgccccctgcatctgctgctgctgtaccttctgtt
gctgcgactgctgcttctcctccacaggcaccctttggatttcctggagatggcatgcag
caaccagcatatacccagcaccaaaacatggatcagtttcaacctcgaatgatggcaata
cagcaggatccagtgcaccatcaggttccacttcctcctaatggacagatgccaggattt
ggccttcttcctacacctccatttcctcccatggctcagtctgtgattcctccaactcca
cccgtgcagcagcctttccaaacttcctttcaggcacaaagtgaaccacttacacaaaag
gcacatcaggaaatggaagtagaacaaccttgtattcaagaggttaagcggcacatgtcc
gataacagaaagtcaagatctagatcagcatccaggtcaccaaaaaggagacgatctcga
tctggttctagaactcgaaggtctcgtcatcgacgttctcgatctcggtccagagataga
cgccgacattctcctagatctcgatcccaagaaagaagggatcgggaaaaagaaagagag
cgccgacaaaaaggccttcctcaaatcaaaccagaaactgctagtgtttgtagtactaca
ctctgggtgggacagctggacaaaaggactactcagcaggatgttgccagtctcttagaa
gagtttggtccaattgaatcaattaatatgattcctcccagaggttgtgcctatattgtt
atggttcataggcaagatgctaaccgtgccctgcagaaactgagccgaggaaactataaa
gtgaaccagaaatccataaagattgcctgggccttaaacaaaggaataaaggcagattat
aagcagtattgggatgtagaacttggtgttacttatattccgtgggacaaagtcaagcct
gaagaactggagagtttttgtgaaggaggaatgttggacagtgatacacttaatccagat
tggaagggaattcccaaaaagcatgaaaatgaagttgctcaaaatggaggggcagaaacc
tcacacacagaaccagtatcacccatacctaagcctttacctgtgcctgtccctcctatt
cctgttcctgcacctataacagtaccacctccacaggtcccaccacatcagccgggacct
cctgtagttggtgctctccagccacccactttcacgcctcctttgggaattccccctcca
ggctttggtcctggtgttcctcctcctccacctcctccaccatttctgcgcccaggattc
aacccaatgcatttaccaccaggttttcttcctcctggacccccacctcctataactcca
ccagtatccattcctcctcctcacactccaccaataaacatcccaaactctactatcgct
ggtataaatgaagacactacaaaagacttatctattggaaatcccattccaacagtggtg
tctggggctagaggaaacgccgagtctggtgacagtgtgaaaatgtatggttctgctgtg
ccacctgctgcacccacgaatctgcccacccctcctgtaacccagcctgtttcacttctt
ggtactcaaggagtaattgggctccaagccccatccactggtcttcttggtgcccgacct
ggcctgatcccactccagcgcccgccaggaatgcctccacctcacctgccacgctttcct
ctgatgccgcctcgtcccatgcctccgcatatgatgcatagaggtccgccaccaggcccc
gggggcttcgggatgcctccgcctcatggaatgaaaggtccctttcctccccacggcccc
tttgtccggcccggtggagtgccagggctcgggggcccagggccaggcccagggggtccc
gaggacagagacggaaggcagccgcagcagcagcagcagcagccgccgccggcaccgcag
gcgcagcaacagccaccgacgcagccaccgcagccgccgccgacgcagccacagccgttt
agaaacgataacaggcagcagttcacttcaggtagagaccaagaaaggtttggaagaaga
tcttttggaaatagggtggaaaatgaccgggaacggtatgggaaccgtaatgatgataga
gagaatagtaatcgtgaaaggagagagtggggaagaaggagccctgaccgggacaggcac
agagacttggaagagaggaatagacgctctagtgggcatcgagacagagagagagattct
agagatagagagtctcgtagagagaaggaggaaaaccgaggcaaggagaagcctgaggtg
acagacagggcaggcggtaacaaaaccgttgaacctcccattagccaagtgggaaatgta
gacactgtttcagaacttgataagggggagtctgagtctgcagttgtaaaaccttctgaa
gagttacctgctgaggctacctcatccgttgaacctgaaaaggattctggctcagcagcc
gaggctcctcgttag
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