Orcinus orca (killer whale): 101278393
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Entry
101278393 CDS
T05247
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101278393 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oor03019
]
101278393 (SMG6)
03032 DNA replication proteins [BR:
oor03032
]
101278393 (SMG6)
Messenger RNA biogenesis [BR:
oor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101278393 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
101278393 (SMG6)
DNA replication proteins [BR:
oor03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
101278393 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
DUF5539
Motif
Other DBs
NCBI-GeneID:
101278393
NCBI-ProteinID:
XP_004267096
LinkDB
All DBs
Position
19:complement(8011762..8250014)
Genome browser
AA seq
1411 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKEPRQRKDNRRPDLEIYKPGLSRLRNRP
KIKEPSGGHEFKDEIVNDRDSSAVGSGTQLIKDVCKDSPQQNGPADPENTRAQESFPRTV
GQEDRSLRIIKRTKKPDMQIYQPGRRLQTVTKESTSRVDEEEIISQVEQLRVEEDACRGN
VKEEVVNKPDKEEAEKSLSGDRIRAAKGEKGKRVEKGEGVKKVNDDPAQGKPGSVKRYSR
SDKRRNRYRTCSTSSAGSNNSAEGTGLTDNGSRRRRQDRTKERPRLKKQVSMSSTDSLDE
DRIDESDGPQRSSERKKHLERSWSGCGEGEQKSNGKENRGTLRVTFDAEAMNRDSPMVRS
AREDSDRLKSDKGSSSVGKGSEKQESKNLRQELRGRGRGILILPAHTTLSVNSAGSPEST
PSGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDEVSPTSW
GDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGVYPAPYYPGYP
TPSGQYVCSPLPASTMSPEEMEQHMRNMQQQELHRLLRVADNQELQLSNLLSRDRISPEG
LEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDPNVENPE
QIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRC
MICQGDIARYREQANDTTNYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYY
YMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEELELSPDQWRKAKKSTFRHVGD
DTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIG
METFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQ
EQAAALGLAMFSLLVQRCTDLLKESAKAQLSSPEEEEDQDDIKVSSFVPDLKELLPSVKV
WSDWMLGYPDTWNPPPTSLDLPSQVAVDVWSMLADFCNILTAVNQSEVPLYKDPDDDLTL
LILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQEEPLLAF
KGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDDIRELRAK
KLALARKIAEQQRRQEKIQAVLEDQSHMRQMELEIRPLFLVPDTNGFIDHLASLAQLLES
RKYILVVPLIVISELDGLAKGQDTDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRAL
TSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPTNKEEPIRLLREVVL
LTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtccggatctccgcgtcggagctgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggagcccaggcaacgcaaagat
aacaggcgcccagatcttgaaatctataagcctggtctttcccgactaaggaacagacct
aaaatcaaggaaccctctggaggtcacgaatttaaggatgaaattgttaatgacagagat
tcttctgctgttggaagtggtacacagctcattaaagatgtctgcaaagacagcccacag
caaaatggtcctgcagacccagaaaatactcgggcacaggagtcttttcctaggactgtt
ggacaagaggatcgaagcctaagaattatcaagagaacaaagaaacctgacatgcagatc
tatcagcctggaaggcgtttgcagactgttaccaaagaatcgaccagcagggtggatgag
gaagaaatcatcagccaggtagaacaactgagagtagaggaagatgcatgtaggggaaat
gtgaaagaggaggttgtgaacaagccagacaaagaggaggcagaaaagagcctaagtggt
gacagaataagggctgcaaagggggaaaaaggaaagagggttgaaaaaggggagggcgtg
aagaaggtgaatgatgacccagctcaggggaagccaggttctgtgaagcgctactcccgc
tcagacaaacgaaggaaccgctaccgcacttgcagtaccagctcagcgggtagcaacaac
agtgcggaggggactggcctgactgataatggaagtcgccgccgccgccaagatcggacc
aaggagaggccacgattgaagaaacaagtatctatgtcctcaactgactccttggatgag
gacagaattgatgagtctgatgggccacagaggagctcagaaaggaagaaacatttagaa
agaagctggtctggctgtggggagggagagcagaaaagcaatggtaaagaaaatcgaggc
actcttcgcgttactttcgatgcagaagccatgaacagagattcccccatggtgaggtca
gccagggaggattcggataggttaaagtcagacaaaggctcgagcagtgtgggcaaaggc
tctgagaagcaggagtccaaaaacctgagacaagaacttcggggtcgtggccgtggcatt
ctgattctgcctgcccataccaccctgtctgtcaattcagccggttctccagagtctacg
ccttcgggacctcggcttttatttggatctggtagtaagggatctcggagttggggccga
ggaggcaccactcgacgattgtgggacccaaacaatcctgatcagaaacctgctctgaag
agccagacaccgcagctacatttcttggacactgatgatgaagtcagccctacctcttgg
ggtgactcacgccaggcccaagcatcttactataagtttcaaaactcggacaacccttat
tattacccccggacaccaggccccgcctcccagtatccttacacaggctatagccctctg
cagtacccagtgggccctacaaatggtgtgtacccagcgccttactacccaggataccca
accccatcaggacagtatgtctgtagccccctccctgccagcaccatgagtcctgaggag
atggagcaacacatgaggaacatgcagcaacaggaactacatcggcttctccgggtggct
gacaaccaagaactgcagctcagcaacctgctctccagggaccgcatcagtcccgagggc
ctggagaagatggctcagctcagagctgaactgctgcagctatatgagcgctgtattcta
ttagatatcgagttctctgataatcagaatgtggatcagatcctgtggaagaatgctttc
tatcaggtgattgagaagttcaggcagcttctcaaggatccgaatgttgagaacccagaa
cagattcggaacagacttttggagctcttggatgagggtagtgacttctttgatagtttg
cttcagaagctgcaggttacttacaagttcaaactggaggactacatggacggtcttgcc
attcgcagcaagccattacgaaagacagtaaaatatgccttgatcagtgcccagcgatgt
atgatttgccaaggagatattgccaggtatcgggagcaagccaatgacacgacaaactac
gggaaagcacgcagctggtacctgaaagcccagcacattgctcccaagaatgggcgcccc
tataaccagttggctctgctggcggtgtatacgaggaggaagcttgatgccgtctattac
tatatgcgcagtctagctgccagcaaccctatcctgactgccaaggagagtctcatgagc
ttgtttgaagagaccaaacggaaggcagaacagatggaaaagaagcaacacgaggaattg
gaactgagccctgaccaatggcggaaagcaaagaaatccactttccggcatgttggagat
gacaccactcgcctggagatctggattcatccatcccatccccggtcctcccagggcact
gagtctgggaaggattctgagcaggagaatgggctgggcagcctgagccccagtgatctg
aacaaaaggttcatcctcagttttctccatgcccatgggaagctgtttacccggattggg
atggagacattccctgcagtggctgagaaggtcctcaaggagttccaggtgttgctgcag
catagtccctctcctattggaagtacccgcatgctgcagcttatgaccatcaacatgttt
gctgtacacaactcccaactgaaagactgcttctcggaggagtgtcgctctgtgatccag
gagcaagccgcagccctgggcctggccatgttttctctcctggtgcagcgctgcaccgac
ttactgaaggaatcagccaaagctcagctgtcctctcctgaggaggaggaggatcaagat
gacatcaaggtgtcttccttcgtccccgacctgaaggaactgctccccagtgtgaaagtc
tggtcggactggatgctcggctatccagacacctggaatcctccgcccacatccctggat
ctgccctcacaggttgctgtggatgtctggtcgatgctggctgatttctgtaacatactg
actgcagtgaatcagtctgaggtgccactgtacaaggacccggacgatgacctcaccctc
cttatcctggaagaggatcggcttctctcgggctttgtacccttgctggctgcccctcag
gacccctgctacgtggagaaaacctcggataaggttattgcagccgactgcaaaagggtc
acagtgctgaagtattttctggaagccctttgtggacaagaagagcctctgctggcattc
aagggtggaaaatatgtgtcagtggcacccgtcccagacaccatgggaaaggaaatggga
agccaagagggaaaacaactggaagatgaggaagaggacgtggtgattgaagactttgag
gaagattcggaggctgaaggcagcgggggcgaggatgacatcagggagcttcgggccaag
aagctggctctggccaggaagatagcggagcagcagcgtcgccaagagaagatccaggct
gtcctggaggaccagagtcatatgaggcagatggagctcgagatcagacccttgttcctc
gtaccagacaccaacggcttcattgaccacctggccagtctggcacagctgctggagagc
aggaagtacatcctggtggtgcccctcatcgtgatcagtgagctggacggcctggccaag
gggcaggacacagaccaccgggctgggggctatgcccgtgtggtgcaggaaaaggcccgg
aagtccattgagttcctcgagcagcgattcgagagtcgggactcttgcctacgggccctg
accagccgtggcaatgaactcgaatccatcgccttccgcagtgaggacatcactggccag
ctgggcaacaatgacgacctgatcctctcctgctgcctccactactgcaaagacaaagct
aaggacttcatgcccaccaacaaagaggagccgatccggctactgcgggaggtggtgctg
ttgacggatgaccggaacctgcgtgtgaaggcgctgaccaggaatgtgcctgtgcgggac
atcccggccttcctcacgtgggcccaggtgggctga
DBGET
integrated database retrieval system
