Orcinus orca (killer whale): 101278409
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Entry
101278409 CDS
T05247
Symbol
SOX1
Name
(RefSeq) transcription factor SOX-1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
oor
Orcinus orca (killer whale)
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oor03000
]
101278409 (SOX1)
Transcription factors [BR:
oor03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101278409 (SOX1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
101278409
NCBI-ProteinID:
XP_033290918
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Position
18:complement(1338448..1342539)
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AA seq
386 aa
AA seq
DB search
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGAGAKANQDRVKRPMNAFMVWSRGQ
RRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRK
TKTLLKKDKYSLAGGLLAAGAGGGGTAVAMGVGVGVGAAAVGQRLESPGGAAAGGYAHVN
GWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPHAHPHNPQP
MHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAAAGGAHQNSAVAAAAAAAA
ASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPAAAAAAAAQ
SRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcccccacg
aacctgtcgggcccggccggggcgggcggtggcggcggcggcggcggcgcgggagccaag
gccaaccaggaccgggtgaagcggcccatgaacgccttcatggtgtggtcccgcggacag
cggcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgcctg
ggcgccgagtggaaggtcatgtctgaagccgagaagcggcctttcatcgacgaggccaag
cggctgcgcgcgctgcacatgaaggagcacccggactacaagtaccggccgcgccgcaag
accaagacgctgctcaagaaggacaagtactcgctggccggcgggctgctggcggcaggc
gcgggcggcggcggcacggccgtggccatgggcgtgggcgtgggtgtgggcgcggcggca
gtgggccagcgcctcgagagcccgggcggcgcggcggccggcggctacgcgcacgtcaac
ggctgggccaacggcgcctaccccggctcggtggcggcggcggcggccgccgcggccatg
atgcaggaggcgcagctggcctacgggcaacatccgggcgcgggcggcgcgcacccgcac
gcgcacccggcgcacccccacccgcaccacccgcacgcgcacccgcacaacccgcagccc
atgcaccgctacgacatgggcgcgctgcagtacagccccatctccaactcgcagggctac
atgagcgcctcgccctcgggctacggcggcctcccctacggcgccgcggccgccgcagcc
gccgccgcgggcggcgcgcaccagaactcggccgtggcggcggcggcggcggcggcggcc
gcgtcgtcgggcgccctgggcgcgctcggctcgctcgtcaagtcggagccgagcggcagc
ccgccggccccggcgcactcgcgggcgccgtgccccggggacctgcgtgagatgatcagc
atgtacttgccggccggcgagggcggcgacccggcggcggcggccgcagccgcggcgcag
agccggctgcactcgctgccgcagcactaccagggcgcgggcgcgggcgtcaacggcacg
gtgcccctgacgcacatctag
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