Orcinus orca (killer whale): 101281209
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Entry
101281209 CDS
T05247
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03082
ATP-dependent chromatin remodeling
oor04714
Thermogenesis
oor05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101281209 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101281209 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101281209 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101281209 (SMARCC1)
03036 Chromosome and associated proteins [BR:
oor03036
]
101281209 (SMARCC1)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101281209 (SMARCC1)
Chromosome and associated proteins [BR:
oor03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101281209 (SMARCC1)
PBAF complex
101281209 (SMARCC1)
GBAF(ncBAF) complex
101281209 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
101281209
NCBI-ProteinID:
XP_004283928
LinkDB
All DBs
Position
10:39957969..40136804
Genome browser
AA seq
1106 aa
AA seq
DB search
MAAAAGSGGLGATAGAAGLGGAAAAAAGLAVYRRKDGGPTSKFWESPETVSQLDSVRVWL
GKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLC
HILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLK
LANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDS
YDTWVHSNDVDVEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQR
ISTKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQK
EEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTG
GKEDEDPGKGDQSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKN
KSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQV
DPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNF
GLRTDVYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECIL
HFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAARAAL
EEFSRVREEVPLELVEAHVKKVQEAARASGKVDPSYGLESSCIAGTGPDEPEKLEGAEEE
KMETDTDGQQPEKAENKGENEMDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENK
ELTDTCKERESDIGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALL
VETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQME
QQQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPG
PGSMMSGQPMPGRMISTVAANIHPPGSGPTPPGMPPIPGNILGPRVPLTAPNGMYPPPPQ
QQPPPPPPTDGVPPPPAPGPPASAAP
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcagcggcgggctgggggcgacggcgggcgctgcgggtctggga
ggcgcggcggcggcggccgcgggcctggcagtttatcgacggaaggacgggggcccgacc
agcaagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctg
ggcaagcactacaagaagtatgttcatgcggatgctcctaccaataaaacactggctggg
ctggtggtacagcttctccagttccaggaagatgcctttgggaaacatgtcaccaacccg
gccttcaccaaactccctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgt
cacattcttggggctgcttacaaatataaaaatgaacagggatggcggaggtttgatcta
cagaatccatcccgaatggatcgtaatgttgaaatgtttatgaacattgaaaaaacattg
gtgcagagcaattgtctaaccagacccaacatctacctcattccagacattgatttgaag
ttggctaataaattgaaagatataatcaaacgacatcaggggacatttactgatgagaag
tcaaaagcttcccaccacatttatccatatccttcctcacaagaggatgaagagtggttg
agacctgtgatgagaaaagacaagcaggtgttagtgcattgggggttttacccagacagc
tatgatacttgggtccatagtaatgatgttgatgtggaaattgaagatccaccaattcca
gaaaagccatggaaggttcatgcaaaatggattttggacactgatgttttcaatgaatgg
atgaatgaggaggattatgaggtggatgagaacaggaagcccgtgagttttcgtcagcga
atttcaacaaagaatgaagagccagtcagaagtccagagagaagagatagaaaagcatca
gctaatgctcgaaagaggaaacattcaccttcccctccacctcccacacccacagaatcc
cggaagaagagcgggaagaaaggccaagctagtctttatgggaagcggagaagtcagaaa
gaggaagatgagcaagaagatcttaccaaggacatggaagacccaacacctgtacccaac
atagaggaggtggttcttccaaaaaatgtaaacccaaagaaagatagtgaaaatacacct
gttaaaggaggaactgtagcagatctagatgagcaggatgaagaaacagtcacaacagga
ggaaaggaagatgaagatcctggcaaaggtgatcagagtcggtcagttgaccctggtgaa
gataatgtgacagagcagaccaatcacattattattcctagctatgcatcgtggtttgat
tataactgtattcatgtgattgaacggcgtgctcttcctgagtttttcaatggaaaaaac
aaatccaagactccggagatatacttggcatatcgaaattttatgatcgacacataccgc
ctaaatccccaggaatatttaaccagcactgcttgtcggaggaacttgactggagatgta
tgtgctgtgatgagggttcatgcctttttagagcagtgggggcttgttaattaccaagtg
gatccagaaagtcgacccatggcaatgggacctcctccgactcctcatttcaatgtatta
gctgataccccctctgggcttgtacctctacatcttcgatcacctcaggttcctgctgct
cagcagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaacttt
ggtcttcgtactgacgtttactccaagaaaaccttagcaaagagtaaaggtgctagtgct
ggaagagaatggactgaacaggagacacttctactgctggaggctctggagatgtataag
gatgactggaacaaagtgtcggaacacgttggaagtcgcacacaggatgaatgcatcctc
cactttttgaggcttcccattgaggacccataccttgagaattctgatgcttccctgggg
cccctggcctaccagcctgtccccttcagtcagtcaggaaacccagtcatgagcactgtt
gcttttttggcatctgtggtggatcctcgtgtggcatctgctgcagccagagcggctttg
gaagagttttctcgagtccgggaggaggtaccactggaattggtggaagctcacgtcaaa
aaagtacaagaagcagcacgagcctctgggaaagtggatccctcctatggtttggagagc
agctgcattgcaggcacagggccagatgagccagagaagcttgaaggagctgaagaggaa
aaaatggaaacagatactgatggtcagcagcctgaaaaggcagaaaacaaaggggagaat
gaaatggatgaaggtgataaagctcaagatggagaaaatgaaaaaaatagtgagaaagaa
caggatagtgaagttagtgaagataccaaatcagaagaaaaggagactgaagagaacaag
gaactcactgatacttgtaaagaaagagaaagtgatattgggaagaagaaagtagaacat
gaaatttctgaaggaaatgtagccacagccgcagcagctgctcttgcctcagctgcaacc
aaagccaagcacttggctgccgtggaagagagaaagatcaagtctctggtagctctcctg
gttgagacacaaatgaagaaactggagatcaaacttagacattttgaggaactggaaacc
atcatggacagagagaaagaagctttagaacaacagaggcagcagttgcttactgaacgc
cagaacttccacatggaacagctgaaatacgctgagttgcgagcccgacagcaaatggaa
cagcagcagcatgggcagaaccctcaacaggcacaccagcactcagggggacctggcctg
gcaccactgggagcagcagggcaccctggcatgatgcctcatcagcagccccctccctac
cctctgatgcaccaccagatgccgccgcctcatccacctcagccaggtcagataccaggt
ccaggttccatgatgtctgggcagcccatgccaggccgcatgatatccaccgttgcagcc
aacatccacccccctgggagtggccctacccctcctggtatgcctccaatcccaggaaac
atcttaggaccccgggtacccctcacggcacctaacggcatgtatccccctccgccgcag
cagcagccacctcctccaccacctacagatggagtccctccgcctcccgctccaggccca
ccagcctcggctgcgccctag
DBGET
integrated database retrieval system
