Orcinus orca (killer whale): 101282918
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Entry
101282918 CDS
T05247
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X11
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03082
ATP-dependent chromatin remodeling
oor04714
Thermogenesis
oor05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101282918 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101282918 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101282918 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101282918 (SMARCA4)
03036 Chromosome and associated proteins [BR:
oor03036
]
101282918 (SMARCA4)
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101282918 (SMARCA4)
Chromosome and associated proteins [BR:
oor03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
101282918 (SMARCA4)
Chromatin remodeling factors
BAF complex
101282918 (SMARCA4)
PBAF complex
101282918 (SMARCA4)
GBAF(ncBAF) complex
101282918 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
101282918
NCBI-ProteinID:
XP_012391317
LinkDB
All DBs
Position
3:7483019..7570446
Genome browser
AA seq
1612 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPASGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL
IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLD
PVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVV
CMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQH
AKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLI
DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD
GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS
EEEEEEEEEEQPQPAQPPALPVEDKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQ
ALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARR
AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV
APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS
EKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKF
ELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTF
NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL
RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDE
VPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVE
RLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKR
DSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDS
SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRSHKYRSLNDLEKDVMLLCQN
AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEDSEGEESEEDEEGEEEGSESESRSVKV
KIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQDEDRSGSGSEED
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccacccctgggcggaactcctcggccaggcccttccccgggcccg
ggcccctcccctggagccatgttgggccctagcccaggtccctcacccggctccgcccac
agcatgatggggcccagcccagggcctccctcagcaggacaccccatcccgacccagggg
cctggagggtaccctcaggacaacatgcaccagatgcacaagccaatggagtccatgcac
gagaagggcatgtcggacgacccccgctacaaccagatgaaggggatggggatgcggtcg
gggggccactccgggatggggcccccgccaagtcccatggaccagcactcccaaggttac
ccctcgcccctgggtggctccgagcacgcctccagtccggttccagccagcggcccagcc
tcaggcccgcagatgtcgtccgggcctggaggcgccccgctggatggtgctgacccccag
gctttggggcagcagaaccggggcccgaccccctttaaccagaaccagctgcaccagctc
agagctcagatcatggcctacaagatgctggcccgggggcagcccctccctgaccacctg
cagatggcggtgcaggggaagcggccgatgcccgggatgcagcagcagatgccaacacta
cctccaccctctgtgtccgcaacaggacctggtcccgggcccgggcccggccccggtcct
ggaccagcacctccaaattacagcaggcctcacggtatgggagggcccaacatgccccct
ccaggaccctcaggtgtgccccccgggatgcccggccagccccctggagggcctcccaag
ccctggcctgaaggacccatggcgaatgctgctgcccccacaagcacacctcagaagctc
atccccccgcagccaacgggtcgcccctcgcctgcaccccccgccgtccctcctgctgcc
tcccccgtgatgccgccccagacacagtcgccagggcagccggcccagcccgcccccatg
gtgccgctgcaccagaagcagagccgcatcacccccatccagaagccgcggggcctggac
cccgtggagatcctgcaggagcgggagtacaggctgcaggctcgcatcgcacaccgaatt
caggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcaaccatc
gagctcaaggccctgaggctgctgaacttccagaggcagctgcggcaggaggtggtggtg
tgcatgaggagggacacggccctcgagacagccctcaacgccaaggcctacaagcgcagt
aagcggcagtccctgcgcgaggcccgcatcactgagaagctggagaagcagcagaagata
gagcaggagcgcaagcgccggcagaagcaccaggaatacctcaacagcattcttcagcac
gccaaggatttcaaagaatatcacaggtcggtcacaggcaaaatccagaaactcacgaag
gcggtggccacataccacgccaacactgagcgggaacagaagaaggagaatgaaagaatc
gagaaggagagaatgcggaggctcatggccgaggacgaggaagggtaccgcaagctcatc
gaccagaagaaggacaagcgcctggcctacctcctgcagcagacggatgagtacgtggct
aacctcacggagctggtgcggcagcacaaggccgcccaggtcgccaaggagaagaagaag
aagaagaaaaagaagaaggcagaaaacgctgaaggacagacacctgcaatcggacctgat
ggcgagcctctggatgagaccagccaaatgagcgaccttccggtgaaagtgatccacgtg
gagagtgggaagatcctcacgggcacagacgcacccaaagcagggcagctggaggcctgg
ctggaaatgaacccggggtatgaagtagctccaagatctgatagtgaagagagtggctca
gaagaagaggaggaggaggaggaggaggagcagccacagccagcacagcctcccgccctg
cccgtggaggacaagaagaagattccagatccagacagcgacgacgtctccgaggtggac
gcccggcacatcattgagaacgccaagcaagatgttgatgacgagtatggcgtgtcgcag
gctctcgctcgtggcctgcagtcctattatgccgtggcccacgccgtcaccgagagggtg
gataagcagtcggcgctcatggtcaacggcgtcctcaagcagtaccagatcaaaggcttg
gagtggctggtgtccctgtacaacaacaacctgaatggcatcctggctgatgagatgggc
ctggggaagaccatccagaccatcgctctcatcacgtacctcatggagcacaagcggatc
aacgggcccttcctcatcatagtacctctctcaacgctgtccaactgggcatacgaattt
gacaagtgggccccctcggtggtgaaggtgtcctacaagggctctccagcagccagacgt
gctttcgttccccagctccggagcggcaagttcaacgtcttgctgacgacctacgagtac
atcattaaagacaagcacatccttgcaaagatccgttggaagtacatgatcgtggacgaa
ggccaccgcatgaagaaccaccactgcaagctgacgcaggtcctcaacacgcactacgtg
gccccccgccgcctgctgctgacgggcacgccgctgcagaacaagctccctgagctctgg
gcgctcctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtgg
ttcaacgcgccctttgccatgaccggggaaaaggtggacctgaacgaggaggaaaccatt
ctcatcatccgtcgtctccacaaagtgctgcggcccttcctgctccggcggctcaagaag
gaagtcgaggctcagttacctgaaaaggtggagtacgtcatcaagtgcgacatgtccgcg
ctgcagcgcgtgctttaccggcacatgcaggccaagggggtgctgctcaccgatggctct
gaaaaggataagaagggcaaaggtggcaccaagaccctgatgaacaccatcatgcagctg
aggaagatctgcaaccacccgtacatgttccagcacatcgaggagtccttttccgagcac
ttgggatttaccggtggcatcgtccaagggctggacctgtaccgagcctcggggaaattt
gagctgctcgatagaattcttcccaaactccgggccaccaaccataaagtgctgctgttc
tgtcagatgacctccctcatgacgatcatggaagactattttgcgtatcgcggctttaaa
tacctcaggctcgatggaaccactaaagcggaggaccggggcatgctgctgaagaccttc
aacgagcccggctccgagtacttcatcttcctgctcagcacccgggctggggggctgggt
ctgaacctccagtcagccgacactgttatcatattcgacagtgactggaacccccaccag
gacctgcaagcgcaggaccgtgcccaccgcatcgggcagcaaaacgaggtgcgtgtgctc
cgcctctgcacggtcaacagcgtggaagagaagatcctggctgcggccaagtacaagctc
aacgtcgaccagaaggtgatccaggccggcatgttcgaccagaagtcctccagccacgag
aggcgcgctttcctccaggccatcctcgagcacgaggagcaggacgaggaagaagacgag
gtgcctgacgacgagacggtgaaccagatgattgcccggcatgaggaagagttcgacctg
ttcatgcgcatggacctggaccgcaggcgcgaggaggcccgcaaccccaagcggaagcca
cgcctgatggaggaggatgagctcccctcgtggatcatcaaggacgacgcagaggtggag
cggctgacatgcgaggaggaggaggagaagatgttcggccgcggctcccgccatcgcaag
gaggtggactacagcgactcgctgactgagaagcagtggctcaaggccatcgaggagggc
acgctggaggagatcgaagaggaggtccggcagaagaaatcatcgcggaagcgcaagagg
gacagcgatgccggcccctccaccccgaccaccagcacccgcagccgcgacaaggacgac
gagagcaagaagcagaagaagcgtggccggccgcctgccgagaagctctcccccaacccg
cccaacctcaccaagaagatgaagaagatcgtggacgctgtgatcaagtacaaggacagt
agtagtggacgtcagctcagcgaggtgttcatccagctgccgtcccgcaaggagctgcct
gagtactacgagctcatccgcaagcctgtggacttcaagaagataaaggagcgcatccgc
agccacaagtaccgcagcctcaacgacctagagaaggacgtgatgctgctgtgccagaac
gcgcagaccttcaacctggagggctccctgatctacgaagactccatcgtcctccagtcg
gtcttcaccagcgtgcggcagaaaatcgagaaggaggaagacagtgaaggggaggagagt
gaggaggacgaggagggcgaggaggaaggctcggagtcggagtctcgctcggtcaaagtg
aagatcaagctaggccggaaggagaaggcccaggaccggctcaagggcggccggcggcgt
ccgagccgtggctccagggccaagccggtggtgagcgacgacgacagtgaggaggagcag
gacgaggaccgctcaggaagtggcagcgaggaagactga
DBGET
integrated database retrieval system
