Orcinus orca (killer whale): 101283658
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Entry
101283658 CDS
T05247
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K08135
collagen type XV alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101283658 (COL15A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oor00535
]
101283658 (COL15A1)
Proteoglycans [BR:
oor00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101283658 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101283658
NCBI-ProteinID:
XP_033287081
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All DBs
Position
6:87885029..87990138
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AA seq
1364 aa
AA seq
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MAQRRDTQCWRLLWLLSISVLLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGY
GGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVMAKPSSARGGVLFAITDAFQKVIYLG
LRLSGVEDGSQRVILYYTEPGSKVSHEAAAFPVPVMTHRWNRFAMVVQGEEVTLLVDCEE
HSHIPFLRSSRVLAFEPSAGIFVGNAGATGLERFTGSIQQLTIHRDPRTPEELCEAEESS
ASGETSGLQDTDRVAEILEAVTYTQAPSREARVGPINTPPILSSPSEDAELSGEPVPEGP
QETTNVSAVPHSSPKQGSGEILNDTLETVDTVDGSPITDTGSGDGAFLHVTEEGPHMEEG
LAATAAAGEAEVSISTAREAEAGSVPTEGLTLSMSTEHPGEGVTLGPDNEEGSAATAAGE
AEVPVSSAGEAEASSVPTGGLTLSMPTQDPGEGLTLGPISEESLTIATAKVPLSTFEEEE
ASGFPTDGLVPLTPTAAPKQVVTSGPGDEDLAAATTEQSLPTAGAEELGGALPEGPPLPI
PTVAPERGVPPGEAGEGLPDPLGPAGPTVGVEAEGSSLGWGVDVGSGDPVPSEELLRGPP
GPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEK
GARGRNGSFGEKGDPGNRGLPGPPGKNGQVGAPGVMGPPGPPGPPGPRGPGCTMGLGFED
TEGSGIIRLLQEPRISGPTASSGPKGEKGDQGPKGERGMDGASIVGPPGPRGLPGRIEVL
SSPLINITHGFMNLSDIPELVGPPGPEGMPGLPGFQGPRGPKGDTGVPGFPGLKGEQGEK
GEPGAILTGDIPLERLRARKGEPGERGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKG
AKGDRGVMMPGSPGLPGPPGPPGPPGAVINIKGAVFPVPVRPHCKTPVGTTYPGNSELIT
FHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPAVDPTYLRHFLNSLKGENRDKGIKGEKGD
SDSGFSVSGPPGLPGSPGLEGQKGETIIGPQGPPGAPGLPGPPGFGRPGSPGPQGPPGPP
GPPAILGAAVAIPGPPGPPGQPGLPGSRNLVTAFSNMADMLQKAHLVIEGTFIYLKDSTE
FFIRVRDGWKKLQLGELIPIPDDSPPPPALSSNSHHLQLPLASISSANYDRPALHLVALN
TPFSGDIRADFQCFQQARAAGLLSTYEAFLSSHLQDLSTVVRKAERYSLPIVNLKGQVLF
DNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRT
ADMAVMGLASPLSTGKILDQKAYSCANRLIVLCIENSFMTDVRK
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaggagggacacgcagtgttggcgcctgctgtggctgctttccatctccgtg
cttctccccgctgtcacccggacccgctccgcgacagaattggcttcccagggccacctg
gacctcacggagctcatcggcgtcccgctgccctcgtccgtgtcctttgtcactggctat
ggtggcttcccggcctacagtttcgggcctggtgccaacgtcggccgcccggccaggacc
ctcatcccacccaccttcttcagggactttgccatcagcgtgatggcgaagcccagcagt
gcccgaggcggcgtgctctttgctatcacagatgccttccagaaggtcatctacctgggc
ctgcggctctcaggagtggaggacggcagccagcgggtcatcctgtactatacggagccc
ggttccaaggtgtcccacgaggctgccgccttcccggtgcccgtgatgacccacaggtgg
aaccgctttgccatggttgtccagggtgaggaagtgaccctccttgtggactgcgaagaa
cacagccacatccccttcctgaggtcctcccgggtcttggccttcgagcccagcgcggga
atcttcgtcggcaacgcaggagccacggggctggagagattcactgggtctatacagcag
cttaccatccaccgtgaccccaggactcccgaggagctgtgtgaagctgaagaatcctcg
gcgtcaggagagaccagcgggcttcaggatacagacagagtagctgagatcttggaagcc
gtcacctacactcaagccccgtctagagaagcaagagttggccccatcaacacacctcca
atcctgtcttctccctctgaggatgcagagctttccggtgaacctgtacctgaggggccc
caggaaaccaccaacgtgagcgccgtcccgcacagcagccccaagcaagggtctggtgag
atcctgaatgacacactggagacagttgatactgtggatggttcccccattactgacact
ggctcgggggatggggccttccttcatgtcactgaagagggtccacatatggaagaaggt
ttggcagcaacagcagcagctggggaggccgaggtgtccatcagcactgccagggaagca
gaggccggcagtgtgcccaccgagggactgaccctctccatgtccaccgagcaccctggg
gaaggggtcactctgggtccagataacgaagaaggttcagcagcgacagcagcaggggag
gccgaggtgcccgtcagcagtgccggggaagcagaggccagcagtgtgcccaccggggga
ctgaccctctccatgcccactcaggaccctggggaagggctcactttgggtccaatcagt
gaagaaagcttaacaatagctacagcaaaagtgcccctcagcacttttgaggaagaggag
gccagcgggttccccactgatggcctggttcccctcacacccacagcggcccccaagcaa
gtagtcacttccggtcctggtgatgaagacttagcagcagccacaacagagcagtccctt
cccacggctggggcagaagagttgggtggcgctctccctgaggggcccccgcttcccata
cccacagtagctcctgaaagaggagtccctccgggtgaagctggggaggggcttcctgac
ccccttggacctgctggacccacggtgggagtggaggctgagggctccagcctgggctgg
ggcgtggacgtcggctctggtgacccagtgcccagcgaggagctgttaagaggtcctcca
ggtcccccaggcccacctggcttacctgggattccaggaaaaccaggaactgatgttttc
atgggcccccctggatcccctggagaagatggacctgctggtgaacctggtcccccgggc
cctgagggaaagcctggacttgatggagcctctggccttcctggaatgaaaggggagaag
ggagcaagaggacgtaatggctcatttggtgaaaagggtgatcccggcaacagaggctta
ccaggacccccagggaaaaatggacaagttggcgctcctggggtcatgggacccccaggg
ccccctggaccccctgggccccgaggtcctggatgtacaatgggacttggatttgaggat
actgaaggctctgggatcatcaggctgttgcaggagcccagaatctctggaccaacggct
tcaagtggtcccaaaggagaaaaaggagaccagggacccaagggtgaaagagggatggat
ggagccagcattgtgggaccccctgggcccagggggctaccagggcgcatcgaggtctta
tctagtcctttgatcaacatcacccatggattcatgaatctttcggacattcctgagctc
gtcgggcctccgggccccgagggcatgcctgggctgccaggatttcaaggacccagagga
ccaaaaggtgacactggtgtgcctggatttccaggactaaaaggagaacagggtgagaag
ggagagccgggcgccatcctgacgggggatattcctctggaacggctgagggcccgaaag
ggtgaacctggagagcgtggagccccgggaccgatggggcccaaaggaccaccaggacac
aaaggagaatttggcctccctggacgacccggtcgcccaggactgaatggcctcaaaggc
gccaaaggagatcgaggggtcatgatgccgggctcacctggcctacctggtcctccaggc
cccccaggaccacctggagctgtgattaacatcaaaggagccgtcttcccagttccagtc
cggccacactgcaaaactccagttggtaccacgtatcctggaaattcagaactcatcact
tttcatggtgttaaaggagagaaaggatcctggggtcttcccggctcaaaaggagaaaaa
ggcgaccagggggcgcagggaccaccaggccctgctgtggatccaacttacctgagacat
tttctgaacagcttgaagggggagaacagagacaaggggatcaaaggagaaaaaggagac
tctgacagcggcttctctgtgtcagggcccccgggcctgccgggaagtccaggcctggag
ggccagaaaggggagaccatcatcgggccccagggacccccaggtgctcctggcctgcct
gggccacctggctttgggagacctggttcccctgggccacagggacccccggggccacca
ggacctccggctatcctaggagcagctgtggccattccaggcccacctggccctccagga
cagccagggcttcccggatccaggaacctggttacagcatttagcaacatggctgacatg
ttgcagaaagcccatttggtcatagaagggacattcatctacctgaaggacagcaccgag
tttttcattcgtgtcagagatggttggaaaaaattgcagctgggagaactgatccccatt
ccggatgacagcccacccccccctgcgctttccagcaattctcatcaccttcagcttcca
ctggcgtctatttcaagtgctaattatgacagacctgcactacacttggtcgctctgaac
acgccattttctggggacattcgagctgattttcagtgcttccagcaggccagggcagca
ggactgttgtccacctacgaagcattcttatcctcccatctgcaagatctctctacagtt
gtgaggaaagcagagagatatagccttccaatagtgaaccttaagggccaagtacttttt
gataattgggactcaattttttctggccatggaggtcagttcaatacacatgttccaata
tattcctttgatggccgagacgtaatgacagatccttcttggccccagaaggttgtttgg
cacggctccagcacccacggagtccgtctcgtggatcagtactgtgaagcgtggcgaacc
gccgacatggcagtcatgggcttggcctccccgctgagcacggggaagattctggaccag
aaagcatacagctgtgctaataggctaattgttctgtgtatcgaaaacagtttcatgaca
gatgtgaggaagtaa
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