Orcinus orca (killer whale): 101285760
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Entry
101285760 CDS
T05247
Symbol
COL23A1
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101285760 (COL23A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101285760 (COL23A1)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101285760 (COL23A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101285760
NCBI-ProteinID:
XP_033270772
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Position
3:18820410..19174704
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AA seq
464 aa
AA seq
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MVTCPNPMGWMGVALEKKRALLSEEGILGNKQHRDAPTLSPREMYPRPWAQGRLWSLVTQ
LCLWVVKHRRNAFPVCNLCALSLSLSLSLSLSLFLVFQGPLGLDGKPGLPGPKGEKGAPG
DFGPQGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAPGPVGAKGEAGQDGETGPSG
PPGPKGDDGTPGQPGLPGPSGPKGEPGQPGADGATGPRGAPGLKGEQGDTVVIDYDGRIL
DALMGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEAGPIGPKGEAGE
MGLSGLPGADGPKGEKGDPASDNLQESLAQIIVEPGPPGPPGPPGPMGLQGIQGPKGLDG
AKGEKGMSGERGSSGLPGPAGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERG
EKGERGVPGRKGMKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggtcacatgtccaaaccctatggggtggatgggggtggctttggagaagaaacgggct
ctgttatcagaggaggggattctgggcaacaaacagcacagagatgcccccaccctgagt
ccacgtgaaatgtacccaagaccatgggctcagggcaggctttggtctcttgtcactcaa
ttgtgcctctgggtcgtaaaacacagaagaaatgcctttcctgtgtgtaacctctgtgct
ctctcactctctctctcactctctctctctctctctctctttctcgttttccagggacca
ctgggtctggatggcaagcccggacttccaggccccaaaggagaaaagggtgcaccagga
gactttggcccccagggagatcaagggcaagatggagctgctgggcctccagggccccca
ggaccccctggggcccggggccctcctggcgacactgggaaagatggccccaggggagca
ccaggcccagtgggtgccaaaggagaagctggacaagatggcgagacgggcccgagtgga
cccccagggcccaagggggatgatgggacaccaggccagccagggctcccaggaccctca
gggcccaagggggagcccggccagccaggcgccgatggagccacagggccgcggggtgcc
ccaggcctcaagggtgagcaaggagacacggtggtaattgactacgatggcaggatcttg
gatgcccttatgggtcctcctgggccacaggggccccccgggccaccagggatccctgga
gccaagggcgaactcggattgcctggtgctccaggaatcgatggagagaagggtcccaaa
ggacagaaaggagacccaggagaagccgggccgataggacccaaaggggaagcaggagag
atgggcctgtcaggcctcccgggtgccgacggccccaagggggagaagggagatccggca
tctgacaacctacaggagagcctggcccagatcatagtggaaccagggcccccaggcccc
cctggtcccccaggccccatgggccttcagggaatccagggtcccaagggcttggacgga
gcaaagggagagaagggcatgtcgggtgagagaggatccagtggcctgcctgggccagct
ggcccaccaggccttattgggctgccaggaaccaaaggagagaagggccgacccggggag
ccaggactagatggtttccctggacctcgaggagagaaaggcgaccggagcgagcgtgga
gagaagggggagcgcggtgtccccggtcggaaaggaatgaaaggccagaagggcgagccg
ggacccccaggcctggaccagccatgtccagtgggccctgatgggctgcccgtgcctggc
tgctggcataagtga
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