Orcinus orca (killer whale): 101286107
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Entry
101286107 CDS
T05247
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101286107 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101286107 (COL25A1)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101286107 (COL25A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101286107
NCBI-ProteinID:
XP_049565600
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Position
4:complement(123916396..124383783)
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AA seq
542 aa
AA seq
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MDSRVYWMHLPSGRRASSSSDIGPLGSPGQKGSVGAPGIPGMNGQKGEPGLPGAVGQNGI
PGPKGQPGERGEKGDAGENGPKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLP
GLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGHPGRGDRGEPGAPGPKGDRGDKGDSG
ALGPRGPPGQKGDQGATEIIDYNGNLHEALQGPPGPPGPQGLQGPKGEPGSPGVPGVDGE
QGLKGSKGDMGDPGMPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPH
GPPGPMGPHGLPGPKGEPGLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPM
GPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGEK
GKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKKILGMAAPVPEGKRCVHLTKT
RVAEDTTCPKKWLAEITFPEDVGELILRSLLKLMRASLPSKIQPMLNIFYKLLETERYFP
FF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggattccagagtctactggatgcatttgcccagtgggaggagagcatcttcctcctct
gatataggtcctctggggtctccaggacaaaagggttctgttggagcacccggaattcca
gggatgaatgggcaaaagggtgaacccgggttgcctggagcagtaggacagaatggaata
ccagggccaaagggacaacctggagaacgaggagaaaagggagatgctggagagaatggc
cccaaaggtgatacaggtgaaaagggtgaccctggatcatccgctgcaggaattaaggga
gagcccggagaatctggtcgtccagggcaaaagggtgaaccagggcttcctgggcttcct
ggacttccggggataaagggagaaccaggtttcattggtcctcaaggagaaccaggctta
ccagggttaccaggaacaaagggcgaccgtggggaggcagggcatcctggaagaggggat
cgaggggagcctggagcccctggaccaaagggtgaccgtggagacaaaggggactctgga
gccctgggaccaaggggtccacctggtcaaaagggagatcaaggagccaccgagatcata
gactacaacggcaacctccacgaagccttgcagggtccccctggaccacctggacctcaa
ggactacaagggccaaagggagagccaggatctccaggagtcccaggagttgatggagag
cagggactcaaaggttcaaagggagacatgggggacccaggtatgccaggtgaaaaagga
ggaattggacttcctggattaccgggtgccaatggaatgaaaggagaaaaaggagactcg
ggattgccaggtcctcagggtccttccatcataggcccaccaggcccaccaggtccccat
ggcccaccaggccccatgggaccccatggacttcctggaccaaagggtgaaccagggtta
aatggtgttaaaggattgaagggtgaaccaggtcaaaagggtgacagaggaccccttggt
cttccaggagcatctggcttagacggaaagccaggatcccggggtacagatggccctatg
ggaccccatggccctgcaggtcccaaaggagaaagaggtgaaaaaggagctatgggagag
ccgggaccccgaggaccgtatggtcttcccgggaaagatggagagcctggtcttgatggt
ttccctggtccgcgaggcgagaagggtgatctaggagaaaagggggaaaagggggaaaag
ggaaagaaaggcaaaaaggggcctaaaggggagaaaggagaacagggtgctcctggatta
gatgcaccctgcccgttggggccagatggattacccatgcccggctgttggcaaaagaag
attcttggaatggcagcccctgttcctgagggcaaaaggtgtgtacatctcaccaaaact
cgggttgctgaagatacaacatgtcccaagaagtggttggccgaaataacctttcctgag
gatgtaggagagctcatcctacgatctctactgaagctgatgagagcttcccttccttcc
aagatccaacccatgttaaacattttctacaaacttctagaaacagaaagatattttcca
ttcttttaa
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