Orcinus orca (killer whale): 101286845
Help
Entry
101286845 CDS
T05247
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101286845 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oor04147
]
101286845 (COL18A1)
00535 Proteoglycans [BR:
oor00535
]
101286845 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101286845 (COL18A1)
Exosome [BR:
oor04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101286845 (COL18A1)
Proteoglycans [BR:
oor00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101286845 (COL18A1)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101286845 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
101286845
NCBI-ProteinID:
XP_004264668
LinkDB
All DBs
Position
5:148224533..148272574
Genome browser
AA seq
1527 aa
AA seq
DB search
MAPDPSGRRGHCGLLLLLACCLAPTWADLMSWLWSANTAGSTVTLASKPPGSSPVQPTED
TSPVRPTEDTTTHVAPQDDPTQQWKALASPEPPLERPEVGQGQAPTVPSAASTASPDTKE
ENIAGVGAKILNVALGIRSFVQLWDDTTPTTSSARAGTPGPENPTDPLTTPGPSRGPQDD
WTTPWLSTGAPSSPDTQRTEAGTLPPPTQPPPSQPPPSPDRPRALLGEPAVPPPSPESQV
TEVGLQPLLGEPLPRQVALVHDPDVGPAYEFGADVGGDGWAARSLLPSTFFQHFSLLVHV
RPASARAGVLFAVTDAAQAVVLVGVKLAEVRGAWQQVQLLYTEPGAARTHTAASFTLPTL
DGRWTRLAIAVDGAHATLFVDCKEVQRQPLARSPRGLQLEPDARLFVAQAGRADPDKFQG
LISDLRLREDPQVSPLHCLDEDEKDDDDRASGDLGSGLAETWERIGEELGAPLGPGLPEA
PPVTSPPLAGVGGQEDFRTEEIEEETTVSSLGAQTLPSLSTVATWDGGEWSPGGGLKEQG
LKGQKGEPGTQGPPGPVGPQGPAGPAVQSPDAQPVPGPQGPPGPPGKDGAPGRDGEPGDP
GEDGKPGDTGPQGFPGTPGDMGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRPDRLTFID
MEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGP
PGLPGTPGPPGPPGKDGQPGQSGQKGSLGEAGTPGPKGSKGDPGPIGTPGEHGLAGRPGP
AGPPGPPGPPGPPGPGLAAGFDDMEGSGGPFWSTARGANGPQGPPGRPGVQGDPGVTGPP
GTKGEAGADGAPGFPGLPGREGAAGLQGPKGEKGPQGEKGDPGKDGVGQPGLPGPPGPPG
PVVYVSEQDRALASVPGPEGRVGLAGLPGPAGPKGDLGSRGQQGLPGPKGEKGEPGMVFS
PDGRALTSAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDAS
VGFSARGPPGPPGPPGPPGPPGTPVYDSNAFVESGRPGPPGLPGHQGPSGPKGDKGEVGP
PGPPGQFPLDLLHLGAEMKGEKGDRGAAGQKGERGEPGGGGFFGSSVPGPPGPPGYPGIP
GPKGESIQGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPG
PPGPPGPPGSMGTSSGVRVWATYQTLLDQVPDVPEGWLIYVADREELYVRVRNGFRKVLL
EARTPLPRGMDNEVAALQPPVVQLHEGNPYPRREPPHPTARSWRADDILASAPRLTHTQP
YPGAPHPGAYAHHRLATPTASPAHTHHDFQPVLHLVALNSPQSGGLRGIRGADFQCFQQA
RAAGLAGTFRAFLSSRLQDLYSIVRRADRATLPIVNLRDEVLSPSWEALFSGSEGQLKPG
ARIFSFDGRDVLQHPAWPQKSLWHGSDPSGRRLTESYCETWRTEARAATGQASSLLAGRL
LEQRAASCHSAFIVLCIENSFTASSSK
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atggctccggaccccagcggccgccgcggccactgtggcctgctgctgctgcttgcttgc
tgcctcgcgcccacctgggctgacctgatgtcctggctgtggtccgctaacactgccggg
tccacggtcacactggcctctaagcccccgggcagctcacctgtgcagcccacagaggac
acctcacctgtgcggcccacagaggacaccaccacgcacgtggccccccaggatgacccc
acccagcagtggaaagcccttgccagccccgagccgcctctggagaggccggaggtgggc
cagggccaggcccccactgtcccctcggcggcctccactgcgagcccagacacaaaggag
gagaacattgccggcgtcggagccaagatcctgaacgtggctctgggcatccggagcttc
gtccagctgtgggacgacaccacccccaccacgagctccgccagggcggggacgccaggc
cccgagaaccccacggaccccctcaccacccctggaccctccaggggcccccaggacgac
tggaccactccctggctgagcaccggggccccgagctctccggacacccagaggaccgag
gccggcaccctgccgccgcccacccagccgccgccctcccagccgccgccctccccggac
aggccccgggccctgctcggggagcctgcggtaccaccgccatccccagagagccaggtc
acggaggtggggctccagccgctgctcggggagcccctgccgcggcaggtggccctggtg
cacgaccccgacgtggggcccgcctacgagttcggcgcggacgtgggtggtgacggctgg
gcggcccggagcctcctgcccagcacgttcttccagcacttctccctgctggtgcacgtg
cggccggcctcggcgcgcgcgggcgtgctcttcgcggtcacggacgcggcgcaggcggtg
gtcctggtgggcgtgaagctggcagaggtgcgcggggcgtggcagcaggtgcagctgctc
tacaccgagcccggtgctgcccgcactcacacggccgccagcttcacgctgcccacgctg
gacggtcgctggacgcgcctggccatcgccgtggacggcgcgcatgccacgctcttcgtg
gactgcaaggaggtccagcgccagcccctggcgcgctccccacgcggcctgcagctggag
cccgacgcccgcctcttcgtggcccaggccggccgagcagaccctgacaagttccagggc
ctgatctcggacctgaggctgcgtgaggacccccaggtgagccccctgcactgcctggat
gaggatgagaaggacgatgatgatagggcgtcaggagacttgggcagcgggcttgcggag
acctgggagcgtatcggggaggagttgggcgcacccctgggacccgggctgcctgaggcc
cctccagtcacttctccgcccttggctggagtgggcggccaggaagatttcagaactgag
gaaattgaggaggagaccacggtgtcttcgctaggagctcagaccctccccagcttgagc
acagtcgccacgtgggacgggggcgagtggagccctgggggcggcctgaaagagcaaggc
ctgaaggggcagaaaggagaaccaggcactcagggtccccccggcccggtcggtccccag
ggtcccgcaggcccggctgtgcagagccccgacgcacagcccgttcccgggccgcaggga
cccccggggcccccgggtaaggacggcgcccccggaagggatggcgagcccggtgatcct
ggcgaagatgggaaacctggggacactgggccgcagggcttcccaggaaccccaggagac
atgggccccaagggcgagaagggggatcctggggtcgggccgaggggacccccaggaccc
caagggcctccagggccacccggaccctccttcagacctgacaggctgaccttcatcgac
atggaggggtccgggtttggtggtgacctggagagcctccgcggccctcgaggcttcccc
ggcccacctgggccccctggcgtcccaggcctgcccggagagccaggccgcttcgggatg
aacagctcggacgtccccggacccgcaggccttcccggagtgcctgggcgggatgggccc
cccgggcttcctgggaccccaggacccccaggtcctccaggaaaagatgggcaaccagga
cagagcggccagaaaggcagccttggcgaggcgggcaccccaggacccaagggaagcaag
ggagaccccggccccatcggcacgcctggggagcacggcctggcaggacgccccggacca
gcaggaccaccagggcccccgggcccccccgggcctccaggcccaggactcgctgcgggg
tttgacgacatggaaggctccgggggccccttctggtcgacagcccgaggtgccaatggg
ccgcagggaccacctggccggcctggagtccagggggatcctggagtcacggggccacca
gggaccaagggagaggccggagcagacggagctcctgggttccccggccttcctggcagg
gagggtgcagccggactccagggaccaaaaggagaaaaagggccccagggagagaaaggc
gacccagggaaggacggagtggggcagccaggcctcccgggaccccccggacccccaggg
cctgtcgtctacgtgtcggagcaggacagagcgctggcgagcgtgccgggccccgagggc
cgggtggggctcgcaggcctccccggaccagccgggccgaagggagacctgggctccaga
ggccagcagggcctcccgggacccaagggcgagaagggtgagccgggcatggtcttcagc
cctgacggcagagcgctgacctccgcccagaaaggagccaagggtgagcctggcttccga
ggacccccgggtccctacgggcggcccgggcacaagggagagattggcttccctggacgg
ccggggcgccccgggatgaacggactgaaaggggagaagggggagccgggagacgccagc
gtgggattcagcgcgaggggtccgcctggcccacctgggcccccagggcccccaggccct
cccgggactcctgtctatgacagcaacgcgtttgtggagtctggccgccctggacccccg
ggactgccagggcaccaggggccttctggaccgaagggtgacaaaggagaagtgggccca
cccgggccaccagggcagttcccgttggacctcctccacttgggcgctgagatgaagggg
gagaagggcgaccgaggggccgccgggcagaagggagaaaggggtgagcccgggggcggc
gggttcttcggctccagcgtgcctggcccccccggcccgccaggctacccggggattccg
gggcccaagggagagagcatccagggccagcctggccctcctggacctcagggaccccct
ggcatcggctacgagggacgccaggggcctcctgggccccctggacctccagggcccccg
ggacccccatcctttcctggcccttacaggcagactatcagtgttcccggccccccaggc
ccacctgggcccccaggaccgcccggatccatgggcacctcctcaggggtgagggtctgg
gccacataccagacgctgctggaccaggtgcccgacgtgccagagggctggctcatctac
gtggccgacagagaggagctgtacgtccgggtccgaaacgggttccggaaggttctgctg
gaggcccgcacgccccttccccgcgggatggacaacgaggtggccgctttgcagcccccc
gtggtgcagctgcacgagggcaacccgtacccccgccgggagcccccgcaccccacagcg
cggtcctggcgggccgacgacatcctggccagcgccccgcgcttgacacacacccagccc
taccctggggccccgcaccccggcgcctacgcgcaccaccggcttgcaacccccacggcc
tcacccgcccacactcaccacgacttccagccggtgctgcacctggtcgcgctcaacagc
ccgcagtcgggaggcctgcgcggcatccgcggcgccgacttccagtgcttccagcaggcg
cgcgccgcggggctggcgggcaccttccgcgccttcctgtcctcgcggctgcaggacctc
tacagcatcgtgcgtcgcgcagaccgcgccaccctgcccatcgtcaacctcagagatgag
gtgctgtctcccagctgggaggccttgttctcgggctccgagggccagctgaagcccggt
gcccgcatcttctctttcgacggcagggacgtcctacagcaccccgcctggccccagaag
agcttgtggcacggctcggaccccagcgggcgccggctgacggagagctactgcgagacg
tggcggactgaggccagggcggccacgggccaggcctcctcgctgctggcgggccggctg
ctggagcagagagcagcaagctgccacagcgccttcatcgtcctctgcatcgagaacagc
ttcacggcctcctcctccaagtag
DBGET
integrated database retrieval system
