Orcinus orca (killer whale): 101287083 Help Entry 101287083         CDS       T05247                                  Symbol COL11A1 Name (RefSeq) collagen alpha-1(XI) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism oor  Orcinus orca (killer whale) Pathway oor04820   Cytoskeleton in muscle cells oor04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:oor00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     101287083 (COL11A1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     101287083 (COL11A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oor00536]     101287083 (COL11A1) Glycosaminoglycan binding proteins [BR:oor00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    101287083 (COL11A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  101287083 NCBI-ProteinID:  XP_004263142 LinkDB All DBs Position 1:121966246..122161701 Genome browser AA seq 1805 aa AA seqDB search MERWSSRWKTKRWLWDFTITTLALTFLFQAREVRGAAPVDVLKALDFHSSPEGISKTMGF CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTVKPKKGIQSFLLSIYN EHGIQQIGVEVGRSPVFLYEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV DCKMKTTKPLDRSERAIVDTSGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS PDCDSSAPKASQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAESVTETPTVTEETIAQTEA NIVDDFQEYNYGTESYQTEAPRRVSGPNEPNPVEEVFTEEYLTGEDYDSQRRNSEDMLYE NKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHGA YGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLPG ADGLPGPPGTMLVLPFRYGGDGSKGPIISAQEAQAQAILQQARIALRGPPGPMGLTGRPG PVGGPGSSGAKGERGDPGPQGPRGVQGPPGPIGKSGKRGRPGADGGRGMPGEPGAKGDRG FDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPG PTGQPGIAGVDGPTGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG LGGLPGADGPPGHPGKEGQSGEKGSLGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKG EDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPAGQAGEKGKLGVPG LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVSGKDG PAGLRGFPGERGLSGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQG PPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKG DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQG LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAG NPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPSGDDGPKGNPGPVGFPGDPGPPG EPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKG EAGAEGPSGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPG LKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGVKGDGGIPGPAGPIGPPG PPGLPGPQGSKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTENI QSDAGDNILDYTDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGE YWIDPNQGCSGDSFKVYCNFTSGGETCIYPDRKSEGVRISSWPKEKPRSWFSEFKRGKLL SYLDVEGNSINMVQMTFLKLLTASARQNFTYSCHQSAAWYDVSSGSYDKALRFLGSNDEE MSYDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGP VCFLG NT seq 5418 nt NT seq  +upstreamnt  +downstreamnt atggagcggtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccataaca actctcgcactgactttcctcttccaggctagagaggtcagaggagctgctccagttgat gtactaaaagctctagattttcacagttctccagagggaatatcaaaaacaatgggcttt tgcacaaacagaaagaattcaaaaggttcagatactgcttacagagtttcaaagcaagca caactcagtgccccaacaaaacagttattttcaggaggaacttttccagaggatttttca atattatttacagtaaaacccaagaaaggaattcagtctttccttttatctatatataat gagcatggtattcagcaaattggtgtggaggttgggagatcacctgttttcctgtatgaa gaccacactgggaaacctgccccagaagactaccccctctttagaactgttaacatcgca gatggaaagtggcaccgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt gattgtaagatgaaaaccacaaaaccacttgacagaagtgagagagcaatcgttgacacc agtggaattacagtttttggaacaagaattttggatgaagaagtttttgagggggacatc cagcagttgttgatcataggtgaccccaaagcagcgtatgactactgtgagcattacagt ccagactgtgattcctcagcacccaaggcttctcaggctcaggaaccccagatcgatgag tatgcacctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag gctgaaagtgtaacagagactcccactgtaactgaagagacaatagcgcaaaccgaggca aatattgttgatgattttcaagaatacaactatggaacagaaagttaccaaacagaagct cctaggcgtgtatctggaccaaatgagccaaatccagttgaagaagtatttactgaagaa tatctaactggagaggattatgattcccagagaagaaattctgaggatatgctatatgaa aacaaagaaatagacggcagggactctgatcttctggtagatggagatttaggcgaatat gatttttatgaatataaagaatatgaagataaaccaacaagccccactaatgaagaattt ggtccaggtgttccagcagaaacagatatcacagaaacaagtataaatggccatggtgca tatggagaaaaaggacagaaaggagaaccagcagtagttgaaccgggcatgcttattgaa ggaccaccagggccagcaggacctgcgggtcttatgggtcctccaggtctacaaggcccc actggaccccctggtgaccctggtgagaggggtcccccaggacgtcccggtctaccagga gctgatggtttacctggtcctcctggtaccatgttagtgttaccgtttcgttatggtggt gatggttccaaaggaccaatcatctctgctcaggaagctcaggcccaggccattcttcag caggctcggattgctctgagaggtccacctggcccaatgggtctaactggaagaccgggt cctgtgggggggcctggttcctctggggccaaaggtgagaggggtgatccaggtcctcag ggccctcgtggtgtccaaggtcctcctggtccaataggaaaatctggaaaaaggggtcgt ccgggtgctgatggaggaagaggaatgccaggagaacctggggccaagggggatcgagga tttgatggacttccaggtctgccaggtgacaagggtcacaggggtgaacgaggtccccaa ggtcctcctggtcctcctggcgaagatggaatgcggggagaagatggagaaataggacca aggggtcttccaggtgaagctggtccacgaggtttgctaggaccaaggggaactccagga cctacaggacagcctggtatcgcaggtgtggatggccccacaggaccaaaagggaacatg ggtccccaaggggagcctggacctccaggtcagcaagggaatccaggacctcaaggtctt cctggtccacaaggtccaattggtcctcccggtgaaaaaggaccacaaggaaaaccaggg ctcggaggacttcctggtgctgatgggcctcctggtcatcctggaaaagaaggccagtct ggagaaaagggttctctgggtcctcctggtccacagggtcccattggctaccctggtccc cgaggagtaaagggagcagatggtgtcagaggtctcaagggctctaaaggtgaaaagggt gaagatggttttccaggattcaaaggggacatgggtcttaaaggtgacagaggggaagtt ggtcaagtaggtccaagaggagaagatggccctgaaggccccaaaggtcgagcaggtccg accggagaccccggtcctgctggtcaagcaggagagaaggggaaacttggtgttccagga ttaccaggatatccaggaagacaaggtccaaagggttccactggatttcctgggtttcca ggtgccaatggagagaaaggtgcccggggtgtagctggcaaaccaggccctcggggtcag cgtggtccaacgggtcctcgaggttcaagaggtgcgagaggtcccactggaaaacctggt ccaaagggcacttcaggcggtgatggtcctcctggccctcctggtgaaagaggtcctcaa ggacctcaaggtccagttggattccctggaccaaaaggccctcctggaccacctggaaag gatggcctgccaggacaccctgggcaacgtggagagactgggtttcaaggcaagaccggc cctcctgggccagggggtgttgttggaccacagggaccaactggtgagactggtcccata ggtgaacgtggacatcctggtcctcctggccctcctggggagcaaggtcttcccggtgct gcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtgtctcagggaaagatgga ccagcaggactacgtggtttcccaggtgaaagaggactttctggagctcagggtgcacct ggactgaaaggaggagaaggtccccagggcccaccaggtccagttggctcaccaggagaa cgtgggtcagcaggaacagctggcccaattggtttgccagggcgaccaggacctcagggt cctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggccccgca gggagagatggagtacaaggccctgtgggtctcccagggcctgctgggcctgctggctcc ccaggagaggatggagacaagggtgaaatcggtgaaccaggacaaaaaggcagcaagggt gacaaaggagaaaatggtcctcctggtcccccaggtcttcaaggtccagttggtgcccct ggaattgctggaggtgatggtgagccaggtcccagaggtcagcaggggatgtttggacaa aaaggtgatgaaggtgccagaggtttcccaggacctccgggtcccataggtcttcagggt ctgccaggcccacctggtgaaaaaggtgaaaatggggatgttggtcccatgggtccacct ggtcctccaggccccagaggtcctcaaggtcccaatggagctgatggaccacaaggaccc ccgggatccattggctcagttggtggtgttggagaaaagggtgagcctggagaagcaggg aacccagggcctcctggggaagcaggcacaggcggtcccaaaggagaaagaggagagaaa ggagaagctggtccacctggtgctgctgggccgcctggtgctaaaggaccatcaggtgac gatggccctaagggtaacccgggtcctgttggttttcctggagatcctggtccccctggg gaacctggccctgcaggtcaggatggtgttggtggtgacaagggtgaagatggagatcct ggacaaccgggtcctcctggcccatctggtgaggctggcccaccaggtcctcctggaaag agaggtcctcctggagctgcaggtgcagagggaagacagggtgaaaaaggtgctaaggga gaagcaggagctgaaggtccttcaggaaaaactggcccagttggtcctcagggacctgcc ggaaagcctggtccagagggtcttcggggcatccctggccctgtgggagaacaaggtctc cctggagctgcaggccaagatgggccacctggtcctatgggacctcctggcttacctggt cttaaaggtgaccctggctccaagggtgagaagggacatcctggtttaattggcctgatt ggtcctccaggagaacaaggtgaaaagggtgacagaggactccctggaactcaaggctct ccaggagtaaaaggggatggaggtattccaggccctgctggtcccataggtccacctggt cctccaggcttaccaggtcctcaaggttcaaagggtaccaaaggctctactggacctgct ggccagaagggtgacagtggtcttccagggcctcctgggcctccgggtccaccgggtgaa gtcatacagcctttaccaatcttgtcacccaaaaaaacaagaagacatacagaaaacatc cagtcagatgcaggtgataatattctggattacactgatggaatggaggaaatatttggt tccctcaattccttgaaacaagacattgagcatatgaagtttccaatgggtacacagacc aacccagcccgaacttgcaaagatctgcaactcagccatcctgacttcccagatggtgaa tattggattgatcctaaccaaggctgctcaggagattccttcaaagtttactgtaatttc acatctggtggtgagacttgcatttatccagacagaaagtcagagggcgtaagaatttca tcatggccaaaggagaaaccaagaagctggtttagtgaatttaagagaggaaaactgctt tcatatttagatgtggaaggcaattccattaatatggtgcaaatgacattcctgaaactg ctgactgcttctgctcggcaaaatttcacctacagctgtcatcagtcagcagcctggtac gatgtgtcatcaggaagctatgacaaagcacttcggttcctgggatcgaatgatgaggag atgtcctatgacaacaacccttacatcaaagccttatatgatggctgtgcgtccagaaaa ggctatgaaaagactgtgattgaaatcaatacaccaaaaattgaccaagtacctatcgtt gatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggtcct gtttgttttcttggctaa

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