Orcinus orca (killer whale): 101289595
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Entry
101289595 CDS
T05247
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04151
PI3K-Akt signaling pathway
oor04510
Focal adhesion
oor04512
ECM-receptor interaction
oor04820
Cytoskeleton in muscle cells
oor04926
Relaxin signaling pathway
oor04933
AGE-RAGE signaling pathway in diabetic complications
oor04974
Protein digestion and absorption
oor05146
Amoebiasis
oor05165
Human papillomavirus infection
oor05200
Pathways in cancer
oor05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101289595 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101289595 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101289595 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101289595 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101289595 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
101289595 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101289595 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
101289595 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101289595 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
101289595 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101289595 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oor04147
]
101289595 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101289595 (COL4A6)
Exosome [BR:
oor04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101289595 (COL4A6)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101289595 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101289595
NCBI-ProteinID:
XP_012392801
LinkDB
All DBs
Position
X:complement(94712997..94997477)
Genome browser
AA seq
1706 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKKPYGKPCGGQDCIGGCKCSPEKGARGRPGPIGIQGP
VGPQGLPGPSGLSGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGP
PGLDGCNGTQGAVGFPGPDGYPGLLGPPGLPGQKGSKGEPILAQDSFKGMKGEPGLPGLD
GVTGPQGAPGSPGAVGPIGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGLQGFPGISGPPGLPGFGIAGEKGEKGIPGLPGPRG
PTGLEGVQGPPGSQGKKGSSGFPGLNGFPGIKGEKGDIGLPGPDVFIDTDGAVISGYPGD
PGMPGLPGLKGDEGIQGLPGPPGAPGLPALPGGPGTLGLQGVPGLKGDQGNPGHTTTGAA
GLPGRDGLPGLPGLPGLPGPAFETGTLQSTEPGLPGLRGERGPKGNPGLKGIKGDSGFCA
CDGGVPNIGPPGGPGLPGPPGLLGLPGLKGARGDPGFGGAQGPSGDPGVFGPRGLEGPKG
KKGEATLSTGSGMPGDQGDPGLQGLPGETGAPGKDGVPGLPGLPGFQGDGGQGFPGEKGL
PGLPGEKGRTGPIGPPGIGLPGSSGPRGLPGDKGVDGFPGQPGPPGIPGDCCCREKVGQG
DLDTEGGITLPCIIPGPYGPSGFPGAPGFPGPNGARGLPGTPGQPGLHGNKGEPGSPGLV
HLPEMPGFPGPRGEKGLPGFPGLPGKDGLPGKVGSPGFPGPKGAPGDIIGAENGAPGKQG
LQGLPGDRGFPGDSGLTGPKGLLGKSGLLGPKGDRGSPGIPGRTGQPGPRGSDGLFGIKG
KPGLPGAPGFPGTSGHPGKKGPRGDIGPPASAGKRGLPGLKGLPGTPGLIGFLGNSGLPG
ATGLPGLPGPKGEKGSVGLIGFPGIPGLPGIPGASGLKGIPGSMGRVGPSGQAGSPGEKG
DRGDPGPVGVPSPRLPVLNLHFTGDKGSQGSPGSIGFPGPRGDKGEAGSPGPPGLPGAPG
FPSLIKGLSGRPGSPGSTGLRGLPGLKGSPGITGFPGIPGESGSQGLSGAPGLPGASGLP
GLKGDQGQTLGISGSPGPKGQPGEPGFKGVKGKDGPVGDVGFPGNKGEDGKVGISGDVGL
PASPGLPGVAGMRGNPGLPGSSGHPGAAGPLGPPGLIGTKGFPGLPGLHGLNGLPGTKGT
HGTPGPSITGVPGPAGLPGPKGEKGSPGIGIGAPGNPGVRGPKGSRGFPGLQGPAGLPGA
PGLSLPSVIAGQPGDPGRPGLDGEQGRPGPPGPPGPPGPSSDQGDPGDPGFPGIPGPQGP
KGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGLPGMKGKAGPRGLSGPRGA
PGQTPIAEAIEAPPGPMGLTGIDGIPGLMGDPGAQGPGGLQGFKGLPGIPGKDGPNGLPG
PPGALGDPGLPGLQGPPGFEGAPGKPGPFGRAGMPGQSVRVGYTLVKHSQSEQVPLCPVG
MSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWL
STTAPIPMMPVSQTQIPPYISRCSVCEAPSQAIAVHSQDITIPQCPVGWRSLWIGYSFLM
HTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEEREQFGE
EPVSETLKAGQLHTRVSRCQVCMKSV
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggcttctcctggttacgttgtgcctgaccgaggaactggcagga
gcgggagagaagaagccctatggaaagccatgtggaggccaagactgcattgggggctgt
aaatgctctcctgagaaaggagcccgagggcgaccaggaccaattggaattcaaggtcca
gtgggtcctcaaggattgcctggccctagtggtttatcagggttgaaaggagaaaggggc
tccccaggacctctgggaccgtatggaccaaaaggagacaagggtcccatgggagttcct
ggctttcttggcatcaatgggattccgggccaccctggacagccaggacccagaggccca
cctggcctggatggctgtaatggaactcaaggagctgttggatttccaggccctgatggc
tatcccgggcttctcggaccacccgggcttcctggtcagaaaggctctaaaggtgaacct
atccttgcccaagatagtttcaaaggaatgaagggggagcctgggctgcccggactggat
ggagtcactggcccacaaggagcacccggatctccaggagctgtgggacccataggacca
ccaggattgcaaggtcctccaggcccccctggtttccctggtcctgatgggaatatgggg
ttaggtttccaaggagagaaaggagtcaagggggatgttggcctgcctggccctgcagga
cccccaccatctactggggaactggaattcatgggatttcccaaagggaagaaaggatcc
aagggtgaaccagggcttcagggcttcccaggaataagtggtcctccaggtctgccgggt
tttggaattgctggagaaaaaggagaaaagggaatccctggtttgccgggacctaggggt
cccacgggtttagaaggagtccaaggccctccagggagtcagggcaagaaggggtcttca
ggtttccccgggcttaatggattcccaggaattaagggtgaaaagggtgacattggcctg
ccaggcccagatgttttcatcgatacagatggtgctgtgatctcaggttatcctggagac
cccggtatgccaggcctcccaggccttaaaggagatgaaggcatccagggcctgcctggc
cctcctggtgcccctggattaccagctttaccaggtggccccggtactctagggctccag
ggagttccaggcctgaagggggaccaaggaaaccccggccacaccacaactggggcagct
ggcctccctggcagagatggtttgccaggcctaccaggcctaccaggcctacccggtcca
gcatttgagacgggaactctacagagcacagagccagggttgcctggtctccgaggagaa
cgaggtccaaaaggaaacccaggcctcaaaggaatcaaaggggactctggtttttgtgct
tgtgatggtggtgtcccaaacattggaccacctggggggccaggcctacctggaccacca
ggtctcctgggccttccgggcctgaaaggagcaagaggagatccaggctttgggggtgca
cagggcccatcaggggatccaggtgtatttgggcctcgaggtctggaaggccccaaagga
aagaaaggggaagcgactctcagtacaggatcagggatgccaggagatcagggtgatcct
ggtctccaggggctccctggtgagacaggagccccaggcaaggacggagtaccaggttta
ccaggcctgccgggctttcagggtgatggtggacagggcttcccaggtgaaaaggggtta
ccaggacttcctggtgaaaaaggccgcactggtccaattggccccccaggaattgggcta
ccaggatcttctggacctcgtgggcttcctggagataaaggagtagatggattcccaggg
caaccaggcccccctgggattccaggtgactgctgctgcagggagaaggttgggcaagga
gacttagacacagagggaggtatcaccttgccttgtattattcctgggccatacggtcca
tcaggatttccaggagctcccggattcccaggccctaacggggcccgtggcctccctggg
actccaggccagcctggattgcatggaaataaaggggagcccggaagtccaggattggtt
cacctccccgaaatgccaggatttcctggacctcgtggagagaagggcttgcctgggttt
cctgggctccctggaaaagatggcttgcctgggaaagttggcagtcccggcttcccaggt
cccaagggagcccctggtgacatcattggtgctgaaaatggtgctcctgggaagcaaggc
ctacagggactgccaggagacagaggatttcctggagactctggccttacaggacccaag
ggtttgcttgggaagtcgggcttgctgggccccaaaggtgatcggggcagccctggaata
ccaggccgcacaggacagccaggcccccggggatctgatggtctattcggcatcaagggc
aaacccgggctcccaggagcaccaggctttccaggcacttcaggacatcctggaaagaaa
ggtccaagaggcgatataggtccccctgcatcagctggaaagagaggcctgcctgggctg
aaaggccttccgggaactccagggctaattggcttcctggggaactccggcttgccaggg
gccactggactgccaggcctgccaggtccgaagggtgagaaggggtctgtcggactgata
ggttttccagggattccaggtctccctggtattcctggtgcaagtggattaaagggaatt
cctgggtcgatgggaagagttggaccatctggacaggctggtagccctggtgaaaaagga
gacagaggcgacccggggccagtcggagtacccagccccagacttccagtgctgaacctg
cacttcacaggagacaaaggctctcagggctcacctggatccatcggatttcctgggccc
agaggtgacaaaggagaggctggcagccctgggccaccaggcttgcctggagctcctggc
ttccccagcctcatcaagggacttagtgggagaccaggctcccctggctccacaggacta
cggggcttacccggcctgaaggggtcccctggaatcacaggtttcccaggaataccagga
gaaagtggttcacagggtctcagtggagctcctgggctcccaggagcatctggtctccca
ggtttaaaaggagatcaaggccagacacttggaatttctggtagcccaggacccaaggga
caacctggggagcctggtttcaaaggtgtgaaaggaaaagatggaccagttggtgatgtg
ggtttcccaggaaacaaaggtgaagatgggaaagttggtatttctggagatgttggcctt
cctgcctccccaggactccccggggttgcaggcatgagaggaaatccaggacttccaggt
tcttcaggccacccaggggcagctgggcccctgggcccccctggcctaataggaaccaaa
ggtttccctggacttcctggtttacatggactgaatgggctgccaggaaccaagggaacc
catggaactccaggacctagtataaccggtgtgcctgggccagctggcctgcctggtccc
aaaggagaaaaaggttctccaggaattggcattggagccccaggaaatccaggcgtgaga
ggaccaaaaggtagcaggggtttcccaggtctccagggccccgctggtctccctggtgcc
ccaggtctctccttgccctcagtcatagcaggacaacctggcgaccccgggcgaccaggc
ctagatggagaacaaggccgcccaggccccccggggcccccaggaccccctgggccatct
tcggatcaaggcgacccgggagaccctggcttccctggaattcctggccctcaagggccc
aagggagaccaaggaattccaggtttctctggcctccctggagagctaggactgaaaggc
atgagaggtgagcctggcttcatggggactccaggcaaagttgggccacctggagaccca
ggacttccggggatgaaggggaaggcagggccaagaggcttatccggcccccgaggcgct
cctggacaaacaccaattgcagaagccatcgaggctcctcctggacccatgggtctaaca
ggcatcgatggcatccctggcctcatgggggaccctggggcccaaggccctggaggccta
caaggcttcaaaggtttacctggcatccccggcaaagacggccccaatggactccctggc
ccacctggggctcttggtgatcctggtctccctggactgcaaggccctccaggatttgaa
ggagctccagggaagccggggcccttcgggagggctggaatgcctgggcagagcgtgaga
gtgggctacaccttggtgaagcacagccagtcagaacaggtgcccctgtgccctgtcggg
atgagccagctgtgggtcggttatagcctgctgttcgtggaggggcaggagaaagcccac
aaccaggacctggggtttgctggctcctgcctgccccgcttcagcaccatgcccttcatc
tactgcaacatcaacgaagtgtgccactatgcccggcgcaacgataaatcctactggctc
tccaccaccgcgcccatccccatgatgcccgtcagccagacgcagattcccccgtacatc
agccgctgctctgtgtgtgaggcgccctcacaagccattgctgtgcacagccaggacatc
accatcccgcagtgccccgtgggctggcgcagcctctggattgggtactccttcctcatg
cacacggccgccggcgctgagggcgggggccagtccctggtctcccctggctcctgccta
gaggatttccgagccactcctttcatcgagtgcagtggtgcccggggcacctgccactac
tttgccaacaagtacagtttctggctgacgacggtggaagagagggagcagtttggggag
gagcctgtatctgagacgctgaaagccgggcagctccacacccgggtcagccgctgccag
gtgtgtatgaaaagcgtgtag
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