Orcinus orca (killer whale): 125964539
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Entry
125964539 CDS
T05247
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC125964539
Organism
oor
Orcinus orca (killer whale)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gag_p30
Gag_MA
RVT_1
RNase_H
RVP
RT_RNaseH_2
RT_RNaseH
rve
zf-H2C2
gag-asp_proteas
Integrase_H2C2
zf-CCHC
Asp_protease_2
zf-H3C2
zf-CCHC_3
zf-CCHC_2
Gag_p24_C
Motif
Other DBs
NCBI-GeneID:
125964539
NCBI-ProteinID:
XP_049566457
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All DBs
Position
5:complement(48197602..48202756)
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AA seq
1478 aa
AA seq
DB search
MGQTVTTPLSLTLSHWTEVRARAHNFSVEVKKGKWQTLCASEWPTFQIGWPPEGSFLLDK
IKLLKSKIFNIDPHGHPDQVPYVLVWEDLILSPPPWVRPFVSSTGTSAHTSAASEILALK
KNPNTEKLPDAPDPPKAIYPDPQSDLLLLDSPPPYPPAPNPLPPRGPPAPLPSAPREPSM
MEEERGPSAGTRSRRAISPDSTALPLREYGPPDGQGNRPLQYWPFSSADLYNWKMHNPTF
SENPQALTALIESLVFSHQPTWDDCQQLLQTLLTTEERQRVLLEARKNVLGANGQPTQLP
NEIDVGFPLVRPNWDFNAPEGRERLKMYHQALVAGLHGAARRPTNLAKVREVTQGPQESP
TVFLERLMEAFRRFTPYDPTSEEHRATVAMAFIDQAAPDIRKKLQRLDGLQGFSLQELVK
EADKVYNKRETEEEKEERKQKEQAARERRRDKRQERNLSKILATVVGGRNIGDRNGQEGR
TADRRRPLDKDQCAYCKEKGHWARECPKKKNGGRPTRNKILTLEEEDXESQGSNPLPEPR
VTLKVEGEPVQFLVDTGAQHSVLLHSKGPISAKRSWVQGATGNKQYSWTTXRTVDLGIGR
VTHSFLIIPECPYPLLGRDLLSKVGAQIHFQPEGPTITDNKGRLLQILTMKLEDEYKLYE
QPSSSRVNVTDWVSRFPQAWAETAGMGMAKNRPPVLVELKATATPITVRQYPMSREAKDG
IRPHIQRLLDLGILIRCQSAWNTPLLPVKKPGTNDYRPVQDLREVNKRVADLHPTVPNPY
NLLSTLPPQHTWYTVLDLKDAFFCLRLSPLSQPYFAFEWKDPTSGMSGQLTWTRLPQGFK
NSPTIFDEALHQDLALYRESNSQVTLLQYVDDILLAAETQEDCIKGTEKLLTELGTLGYR
ASAKKAQICQQQVSYLGYLLKGGQRWLTESRKDTVAQIPAPKNARQVREFLGTAGFYRLW
IPGFAELAAPLYPLTKNSTPFVWGDKEQRAFDQIKRALLSAPALGLPDVTKPFHLYVAEN
KGIAKGVLTQKLGPWNRPVAYLSKKLDPVASGWPTCLKIIAAVAVLVKDADKLTLGQNLT
ITAPHALENVVRQPPDRWLTNARMTHYQTLLLNSDRIKFAPATGLNPATLLPDPDLEGST
IIHDCQEVLAAAHGSRPDLMDLPLPDADFTWFTDGSSFLEEGKRRTGAAVVDGKQVIWAA
ALPQGTSAQRAELIALTRALEMAENKKVNIYTDSRYAFATAHIHGAIYQQRGLLTSGGKE
IKNKXEIMALLTALMLPTKVSIIHCPGHQKGNTPIIRGNNMADQVAREIASGEVILGLSD
KVPEKPGRDEEIIPATTKGTLSPQQAESMLQQMHRWTHLGTKNMVALLQKAGYETPXMTK
LAEQIVQECVPCQQVNAHKGKLETGKRLRGDRPGTYWEVDFTEVRPGRYGNKYLLVFVDT
FSGWIEAFPTKKETAAVVAKKXFRRNFSSIWSTKGNRV
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaactgtgacgactcctctttcccttaccctaagccattggaccgaagttcgg
gccagagcacataatttttcggtagaggtgaagaaaggaaagtggcagactttgtgtgcc
tctgaatggccaacatttcagataggatggccccccgaaggatcctttttattagacaag
attaagctgctgaagtctaagatatttaatatagatccccacggacatccagaccaagta
ccatatgtcttggtctgggaagatttaattctctccccacctccgtgggtccggcccttt
gtttcctcaacaggtacgtccgcgcacacatcagcagcgtcggagatattagccttaaag
aaaaaccccaacacggaaaagctacctgacgccccggatccaccgaaggcgatttatcct
gacccgcagtccgatttgcttcttttggattccccacccccttatcctccggccccaaat
cccctaccacctagaggacccccagctccactgccctcggcaccaagggaaccatccatg
atggaagaagaaaggggtccctcagcgggcactaggagccgtagggctatctccccggac
tccactgccctacctcttagagaatatggcccccccgacggccaagggaatagacctctc
caatattggcccttttcctctgcagatctttataattggaaaatgcataacccaactttt
tccgaaaatccacaggcccttaccgctttaatagaatctcttgttttctcccaccagccc
acatgggatgattgtcagcagctgcttcagactctcctaacgactgaggagaggcaacgg
gttcttttagaagccagaaaaaatgtattaggcgccaatgggcaacctacccagctgcct
aacgagattgacgttggtttcccactcgtcaggccaaactgggatttcaatgccccggaa
ggtagggagcgcctgaaaatgtatcaccaggctctggtggcgggtctccatggagcggcc
agacggcccactaatttggctaaggtaagggaagtaactcaggggccccaggaatcgcca
actgtgttcctggaacgtttaatggaagcctttagacgctttaccccttatgatccaact
tcggaggaacatagggctactgtagcaatggctttcattgatcaagcggcccctgatatt
aggaagaaattacagaggctagatggcttgcagggattttcgcttcaggagttagtaaaa
gaggcagataaagtatataacaaaagagaaacagaggaagagaaggaagaaagaaagcag
aaagagcaggcagcccgtgaaagaagacgagataagagacaagagaggaatttaagtaag
atactggccactgtggttggaggaagaaatataggggatagaaatgggcaggaagggcga
acggcagacagaaggcgaccattagacaaggaccaatgtgcctactgtaaagaaaaagga
cattgggcgagagaatgccctaagaaaaagaatggaggaaggccaaccagaaacaaaatc
ttaacattggaagaagaagactaggaaagtcagggctcgaaccctctccccgagccccgg
gtaactcttaaagtggagggggaacctgttcaatttttggtagatactggagcccaacac
tccgtccttctccactcaaaaggtcctatctcagctaaaaggtcatgggtacaaggagcc
actgggaataaacaatattcatggaccacatgaaggacagtagatcttgggattggacga
gtaacccattcatttttgattattccggaatgcccctatcctttgctgggaagagattta
ctctccaaagtaggggctcaaatccactttcagccagaaggtcccaccataactgataat
aaaggaaggttacttcaaatattgactatgaaattagaagatgaatataaattatacgag
cagccttcatcctcacgagttaatgttacagattgggtaagtcggttccctcaagcctgg
gcagaaactgccggaatggggatggccaaaaatcggcccccggtgctagtggaactcaag
gcaactgccaccccaataacggtccgtcaataccccatgagtagagaagccaaagacggt
atccgtccccatatacagaggctactagacttgggcatcttaataagatgtcaatcagca
tggaacacccctctcctgccggtaaagaaaccaggaacaaatgattatcggccggtgcag
gatctacgagaggtaaacaaacgggtggcagacctccaccccacagttccaaacccttac
aacctcctgagcactcttccacctcaacatacgtggtatactgttttggaccttaaagat
gcttttttctgtttaagactctctcccctgagccaaccctactttgccttcgaatggaaa
gatccaacatcgggaatgtctggtcagctgacatggacacggctacctcagggatttaag
aactccccgaccatctttgatgaagccctccatcaggatttggcattatatagagaatca
aattcccaggtaacattactccaatacgttgatgatattttattagctgctgagacccaa
gaagattgtatcaagggtactgaaaaactgttaacggaacttggaaccctgggatataga
gcctcagccaagaaagcacaaatatgccaacaacaggtcagttacctggggtatctatta
aaaggggggcaaagatggctcacggagagcagaaaggatacggtggcccaaattccggct
cccaaaaacgccaggcaggttagagaatttttggggacggccggattctatagactatgg
attccagggtttgctgagctggcggccccattgtaccctctaaccaaaaacagcactcct
ttcgtttggggcgataaggaacaacgggcttttgaccaaatcaaacgagctttactttca
gctccagccctaggactgccagatgtaaccaaaccttttcatttatatgtggccgaaaat
aagggcattgcaaaaggagtattgactcagaaattgggtccctggaatcgcccagttgct
tatttgtcaaaaaaattggaccctgtggcatcaggatggcccacctgtttaaagataatc
gctgcagtggccgttctagtcaaagatgctgacaaactaactttaggacaaaatctaacg
ataacagctcctcatgccctggaaaatgtagtccgtcaaccaccggataggtggctaact
aatgccaggatgacccattaccaaaccctgttgctaaactcagatcgcatcaagtttgct
ccagccacaggactcaatccagccaccttgctacctgatcctgacttggaaggctccacc
atcatacatgattgtcaggaagtactggccgcagcacacggcagtaggccagatctgatg
gacctgcccctccctgatgctgatttcacctggttcacggatgggagcagtttcctggag
gaaggtaagcgtcgaactggggcagccgtggtagacggaaaacaagtcatatgggcagcg
gcgctaccacaagggacctcagcccaacgagctgaattaattgccctgacgagggcatta
gagatggcagagaataaaaaagtaaacatctacacagacagtagatatgcgtttgctacc
gctcatatccacggtgccatttaccaacagagagggctactaacttcaggtggcaaagaa
attaaaaacaagnacgaaatcatggctttgttgactgcactcatgcttcctactaaagtc
agtatcatccactgccctggacatcaaaaaggaaataccccaataattaggggaaataat
atggctgaccaagtggcccgagaaatagcatcgggagaagtcattctaggactgtcagat
aaagttcctgaaaaaccaggccgcgatgaagaaatcatcccggccacaacaaaaggaact
ttgtcccctcagcaagcagaatccatgttacaacagatgcacagatggacacatttgggg
actaaaaatatggtagccttgttacaaaaagccgggtatgaaaccccttgaatgacaaaa
ttagctgaacaaattgtgcaggaatgcgtcccatgtcaacaggtaaatgctcacaaaggg
aaacttgaaactggaaagagactcaggggggaccgcccaggaacttactgggaggtggac
tttaccgaagtgcgtcctggaaggtacggtaataaatatcttttagtttttgtagacact
ttttcaggatggatagaggctttcccaacaaagaaagaaacagctgctgtagtagccaag
aagnattttagaagaaatttttcctcgatttggagcaccaaaggtaatagggtctga
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integrated database retrieval system
