Orcinus orca (killer whale): 125965398
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Entry
125965398 CDS
T05247
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC125965398
Organism
oor
Orcinus orca (killer whale)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gag_p30
Gag_MA
MLVIN_C
RVT_1
RNase_H
rve
RVP
RT_RNaseH_2
RT_RNaseH
zf-H2C2
Integrase_H2C2
zf-CCHC
gag-asp_proteas
zf-H3C2
pPIWI_RE_Z
zf-CCHC_3
zf-CCHC_2
Gag_p24_C
Asp_protease_2
rve_3
Motif
Other DBs
NCBI-GeneID:
125965398
NCBI-ProteinID:
XP_049570770
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All DBs
Position
9:complement(65973459..65980550)
Genome browser
AA seq
1695 aa
AA seq
DB search
MGQTMTTPLSLTLSHWTEVRARAHNFSVEVKKGKWQTVCASEWPTFQIGWPPEGSFLLDK
IKLLKSKIFNIDPHGHPDQVPYVLVWEDLILSPPPWVRPFVSSTGTSAHTSAASEILALK
KNPNTEKLPDAPDPPRAIYPDPQSDLLLLDSPPPYPPAPNPLPPRGPPAPLPSAPREPSM
MEEERGPSAGTRSRRAISPDSTALPLREYGPPDGQGNRPLQYWPFSSADLYNWKMHNPTF
SENPQALTALIESLVFSHQPTWDDCQQLLQTLLTTEERQRVLLEARKNVLGANGQPTQLP
NEIDAGFPLVRPNWDFNAPEGRERLKMYRQALVAGLHGGARRPTNLAKVREVTQGPQESP
TVFLERLMEAFRRFTPYDPTSEEHRATIAMAFIDQAAPDIKKKLQRLDGLQGFSLQELVK
EADKVYNKRETEEEKEERKQKEQEAREIRRDKRQERNXSKILATVVGGGNTGDRNRHKGR
TADRRRPLDKDQCAYCKEKGHWARECPKKKNGGRPTRNKILTLEEEDXESQGSNPLPEPR
VTLKVEGEPVQFLVDTEAQHSVLLHSKGPISAKRSWVQGATGNKQYSWTTRRTVDLGIGR
VTHSFLIIPECPYPLLGRDLLSKVGAQIHFQPEGPTITDNKGRLLQILTMKLEDEYKLYE
QPSSSRVNVTDWVTRFPQAWAETAGMGMAKNRPPVLVELKATATPITVRQYPMSREAKDG
IRPHIQKLLDLGILIRCQSAWNTPLLPVKKPGTNDYRQVQDLREVNKRVADLHPTVPNPY
NLLSTLPPQHTWYTVLDLKDAFFCLRLSPLSQPYFAFEWKDPTSGMSGQLTWTRLPQGFK
NSPTIFDEALHQDLALYRKSNPQVTLLQYVDDILLAAETQEDCIKGTEKLLTELGTLGYR
ASAKKAQICQQQVSYLGYLLKGGQRWLTESRKDTVAQIPAPKNARQVREFLGTAGFCRLW
IPGFAELAAPLYPLTKNSTPFVWGDKEQRAFDQIKRALLSAPALGLPDVTKPFHLYVAEN
KGIAKGVLTQKLGPWNRPVAYLSKKLDPVASGWPTCLKIIAAVAVLVKDADKLTLGQNLT
ITAPHALENVVRQPPDRWLTNARMTHYQTLLLNSDRIKFAPATGLNPATLLPDPDLEGST
IIHDCQEVLAAAHGSRPDLMDLPLPDADFTWFTDGSSFLEEGKRRTGAAVVDGKQVIWAA
ALPQGTSAQRAELIALTRALEMAENKKVNIYTDSRYAFATAHIHGAIYQQRGLLTSGGKE
IKNKDEIVALLTALMLPTKVSIIHCPGHQKGNTPIIRGNNMADQVAREIASGEVILGLSD
KVPEKPGRDEEIIPATTKGTLSPQQAESMLQQMHRWTHLGTKKMVALLQKAGYETPGMTK
LAEQIVQECVPCQQVNAHKGKLETGKRLRGDRPGTYWEVDFTEVRPGRYGNKYLLVFVDT
FSGWIEAFPTKKETAAVVAKKILEEIFPRFGAPKVIGSDNGPAFVAQVSQDVARYLGTDW
KLHCAYRPQSSGQVERMNRTLKETLTKLSLETGGTDWMVLLPLALFRVRNTPSRYHLTPF
EILYGAPPPLLTLGKEIKPDCQNNTDLYARLLGLQLVQKEIWSQLAEAYQPGTPGETHPF
QVGDSVYVRRHRTQTLEPRWKGPYTVLLTTPTAIKVDGIAAWIHASHVKAAPATASSGWR
AQRTDNPLKLKLLRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaactatgacgactcctctttcccttaccctaagccattggaccgaagttcgg
gccagagcccataatttttcggtagaggtaaagaaaggaaagtggcagactgtgtgtgcc
tctgaatggccaacatttcagataggatggccccccgaaggatcctttttattagacaag
attaagctgctgaagtctaagatatttaatatagatccccacggacatccagaccaagta
ccatacgtcttggtctgggaagatttaattctctccccacctccgtgggtccggcccttt
gtttcctcaacaggtacgtccgcgcatacatcagcagcgtcggagatattagccttaaag
aaaaaccccaacacggagaagctacccgacgccccggatccaccgagggcgatttatcct
gacccgcagtccgatttgcttcttttggattccccacccccttatcctccggccccaaat
cccctaccacctagaggacccccagctccactgccctcggcaccaagggaaccatccatg
atggaagaagaaaggggtccctcagcgggcactaggagccggagggctatctccccggac
tccactgccctacctcttagagaatatggcccccccgacggccaagggaatagacctctc
caatattggcccttttcctctgcagatctttataattggaaaatgcataacccaactttt
tccgaaaatccacaggcccttaccgctttaatagaatctcttgttttctcccaccagccc
acatgggatgattgtcagcagctgctccagactctcctaacgactgaggagaggcaacgg
gttcttttagaagccagaaaaaatgtattaggcgccaatgggcaacctacccagctgcct
aacgagattgatgctggtttcccactcgtcaggccaaactgggatttcaatgccccggaa
ggtagggagcgcctgaaaatgtatcgccaggctctggtggcgggtctccatggaggggcc
agacggcccactaatttggctaaggtaagggaagtcactcaggggccccaggaatctcca
actgtgttcctggaacgtttaatggaagcctttagacgctttaccccttatgatccaact
tcggaggaacatagggctactatagcaatggctttcatagatcaagcggcccccgatatt
aaaaagaaattacagaggctagatggcttgcagggattttcgcttcaggagttagtaaaa
gaggcagataaagtatataacaaaagagaaacagaggaagagaaggaagaaagaaagcag
aaagagcaggaagcccgtgaaataagacgggataagagacaggagaggaattaaagtaag
atactggccactgtggttggaggaggaaatacaggggataggaataggcacaaagggcga
acggcagacagaaggcggccattagacaaggaccaatgtgcctactgtaaagaaaaagga
cattgggcgagagaatgccctaagaaaaagaatggaggaaggccaaccagaaacaaaatc
ttaacattggaagaagaagactaggaaagtcagggctcgaaccctctccccgagccccgg
gtaactcttaaagtggagggggaacctgttcaatttttggtagataccgaagcccagcac
tccgtccttctccactcaaaaggtcctatctcagctaaaaggtcatgggtacaaggagcc
actgggaataaacaatattcatggaccacacgaaggacagtagatcttgggattggacga
gtaacccattcatttttgattattccggaatgcccctatcctttgctgggaagagattta
ctctccaaagtaggggctcaaatccactttcagccagaaggtcccaccataactgataat
aagggaaggttacttcaaatattgactatgaaattagaagatgaatataaattatacgag
cagccttcatcctcacgagttaatgttacagattgggtaactcggttccctcaagcctgg
gcagaaactgccggtatggggatggccaaaaatcggcccccggtgctagtggaactcaag
gcaactgccaccccaataacggtccgtcaataccccatgagtagagaagccaaagacggt
atccgtccccatatacagaagctactagacttgggcatcttaataagatgtcaatcagca
tggaacacccctctcctgccggtaaagaaaccaggaacaaatgattatcggcaggtgcag
gatctacgagaggtaaacaaacgggtggcagacctccaccccacagttccaaacccttac
aacctcctgagcactcttccacctcaacatacgtggtatactgttttggaccttaaagat
gcttttttctgtttaagactctctcccctgagccaaccctactttgccttcgaatggaaa
gatccaacatcgggaatgtctggtcagctgacatggacacggctacctcagggatttaag
aactccccgaccatctttgatgaagccctccatcaggatttggcattatatagaaaatca
aatccccaggtaacattactccaatacgttgatgatattttattagctgctgagacccaa
gaagattgtatcaagggtactgaaaaactgttaacggaacttggaaccctgggatataga
gcctcagccaaaaaagcacaaatatgccaacaacaggtcagttacctggggtatctatta
aaaggggggcaaagatggctcacggagagcagaaaggatacggtggcccaaattccggct
cccaaaaacgccaggcaggttagagaatttttggggacggccggattctgtagactatgg
attccagggtttgctgagctggcagccccattgtaccccctaaccaaaaacagcactcct
ttcgtttggggcgataaggaacaacgggcttttgaccaaatcaaacgagctttactttca
gctccagccctaggactgccagatgtaaccaaaccttttcatttatatgtggccgaaaat
aagggcattgcaaaaggagtattgactcagaaattggggccctggaatcgcccagttgct
tatttgtcaaaaaaattggaccctgtggcatcaggatggcccacctgtttaaagataatc
gctgcagtagccgttctagtcaaagatgctgacaaactaactttaggacaaaatctaacg
ataacagctcctcatgccctggaaaatgtagtccgtcaaccaccggataggtggctaact
aatgccaggatgacccattaccaaaccctgttgctaaactcagatcgcatcaagtttgct
ccagccacaggactcaatccagccaccttgctacctgatcctgacttggaaggctccacc
atcatacatgattgtcaggaagtactagccgcagcacacggcagtaggccagatctgatg
gacctgcccctccctgatgctgatttcacctggttcacggatgggagcagtttcctggag
gaaggtaagcgtcgaactggggcagccgtggtagacggaaaacaagtcatatgggcagcg
gcgctaccacaagggacctcagcccaacgagctgaattaattgccctgacgagggcatta
gagatggcagagaataaaaaagtaaacatctacacagacagtagatatgcgtttgctacc
gctcatatccacggtgccatttaccaacagagagggctactaacttcaggtggcaaagaa
attaaaaacaaagatgaaatcgtggctttgttgactgcactcatgcttcctactaaagtc
agtatcatccactgccctggacatcaaaaaggaaataccccaataattaggggaaataat
atggctgaccaagtggcccgagaaatagcatcgggagaagtcattctaggactgtcagat
aaagttcctgaaaaaccaggtcgcgatgaagaaatcatcccggccacaacaaaaggaact
ttgtcccctcagcaagcagaatccatgttacaacagatgcacagatggacacatttgggg
actaaaaagatggtagccttgttacaaaaagccgggtacgaaacccctggaatgacaaaa
ttagctgaacaaattgtgcaggaatgcgtcccatgtcaacaggtaaatgctcacaaaggg
aaacttgaaactggaaagagactcaggggggaccgcccaggaacttactgggaagtggac
tttaccgaagtgcgtcctggaaggtacggtaataaataccttttagtttttgtagacact
ttttcaggatggatagaggctttcccaacaaagaaagaaacagctgcggtagtagccaag
aagattttagaagaaatttttcctcgatttggagcaccaaaggtaatagggtctgataat
ggtccagccttcgtcgcccaggtaagtcaggatgtggccagatatttggggactgattgg
aaattacattgtgcctatagaccccaaagttcaggtcaggtagaaagaatgaataggact
ctaaaagagaccctaactaaattgtccttggagactggcggtaccgattggatggtgctc
cttcctttggccctattccgggttagaaatacaccttcccgataccatcttactcctttt
gaaatattatatggtgccccgcctcccctcctcactttaggaaaagaaataaaacctgat
tgtcaaaataacactgacttatatgctaggctactgggacttcaattggtccagaaagaa
atatggtcccaactcgccgaggcctaccaaccgggaacaccgggagaaactcatcctttc
caagtcggagactccgtatacgtccgtcggcatcgaacccagacgttggaacctcgatgg
aaaggaccatacaccgtcctcctcaccaccccaacggccataaaagtggacggcatcgct
gcctggatccatgcttcacatgtgaaggctgcaccagcgacggcatcatcaggatggcgg
gcccaaagaaccgacaacccgctcaaactcaagcttctacgaacctaa
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