Ochotona princeps (American pika): 101516123
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Entry
101516123 CDS
T07609
Symbol
TRERF1
Name
(RefSeq) transcriptional-regulating factor 1 isoform X1
KO
K26583
transcriptional-regulating factor 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101516123 (TRERF1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
MiDAC complex
101516123 (TRERF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_6
zf-C2H2_4
ELM2
zf-C2H2
Myb_DNA-binding
zf-met
zf-C2H2_2
Motif
Other DBs
NCBI-GeneID:
101516123
NCBI-ProteinID:
XP_004590425
LinkDB
All DBs
Position
12:complement(39639147..39844488)
Genome browser
AA seq
1233 aa
AA seq
DB search
MGDQQLYKTNHVGQGGGENLFYQQPPLGVPSGLNHNYGNSVPGSGMDAPQASPLSPHFPQ
DVRDGLGLPVGSKNLGQMDTSRQGGWGGHTGPGNHVQLRGNLANSNMMWGAPAQAEPTES
YQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDS
ALRQLLSQKPMEPPAPAISSRYSQVPQQPHPGFTGGLSKPALQVGQHPPPGHLYYDYQQP
LTQLPGQGGQALQAPQMLSQHMPQMQQHQYYPQQPPQQAGQQRLSMQEMQQQQQQQIRPP
QPPQQQQQQLQLQPRQGSMQIPQYYQPQPMMPHLQEQQQQQQQQMHLQPPSYHRDPHQYT
PEQAHAVQLIQLGSMPQYYYQESQQPYSHPLYQQSHLPQHQQREDSQLKTFSSDRQAQAM
LSSHGDLGPPDTGMGDSTSSDLPRVSSALPHRPLLSPSGMHLNSLGPQHQQASPSAVWPQ
MHLPDGRAQPGSPESSGQAKGVFGEQFDAKNKLCPICLKEFKSLPALNGHMRSHGGMRAS
PSLKQEEGEKAPPPAPQPPPPPPQPQPPQPPLPPPPPPPPPPPAPAPPQLPPEAESLTPM
VMPVSVPVKLLPPKHSSQGFTNSVAAAPAAARDLPASSVSDDEMPVLVRMTLSPPHSPPG
AAPRTPAEIPRKLQPGAPKPEEPPKTVQEKKKFRHRPEPLFIPPPPSYNPSPASYSGATL
YQSQLRSPRILGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGTGAHPQLPL
TPLTPTPRVLLCRSNSIDGNNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSSLAQ
DKHKATLVWKPWPELENHDLQQRVENLLNLCCSSALPGGGTNSELALHSLFEAKGDVMAA
LEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVA
QCVEYYYTWKKIMRLGRKHRTRLAEIIDDCMTSEEEEELEEEEEDMEEDRKSTKEEETEV
PKTPEPPPVPILAPTEGPPLQALGHPPGSFICEMPNCGAVFSSRQALNGHARIHGGTNQV
TKARGAIPSGKQKPGGAQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNA
HMKTHRQQEEQQRQKAQKAAFSAEMAATIERTTGAPGLLPLDQLSLIKPVKNVDVLDQEV
VQQLGGVEEAEGVDTDLLLDDQDSVLLQGDTEL
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgggggatcaacaactgtacaagaccaaccatgtgggccagggtggtggtgagaacctt
ttctaccaacagccaccacttggcgtccccagcgggctgaaccacaactatgggaattca
gtcccagggagcggaatggatgccccacaggcctcgcccctctccccccacttccctcaa
gatgtgagagatggcctgggtttacctgttggctccaaaaacctgggccaaatggatacc
tcaaggcagggaggatggggtggtcacacggggcctggaaaccatgtccagctacgtggc
aacctggccaactcgaatatgatgtggggggcaccagcccaggccgagcccaccgaaagc
taccaatatacttactcccaggccagcgagatccgcacccagaagcttaccagcggcgtc
ttgcacaagctggactctttcacccaggtttttgccaaccaaaacctgagaattcaggtc
aacaatatggcccaggtgctgcacacccagtcggcagtaatggatggagcccccgacagc
gccctccgccagctgctctctcagaagcccatggagcccccagcaccggctatctcttcc
cgctattcacaggtgccccagcagcctcaccctggtttcacaggtgggctgtccaaacca
gctcttcaggtcgggcagcaccctccccctgggcacctgtattatgactaccagcagcca
ctgactcagttgccagggcagggaggacaagcgttgcaagccccacagatgttgtcccaa
cacatgccccagatgcagcagcaccagtattacccacaacagccgccacagcaagctggg
cagcagcggctctccatgcaggaaatgcaacaacagcaacaacaacagattcgcccccca
cagccgccgcagcagcaacagcagcagctacaattgcagccgcggcagggttccatgcag
atacctcagtattatcaaccccaacccatgatgccacacttgcaagagcagcagcaacag
cagcagcaacagatgcacctgcagcctccttcttatcacagggaccctcaccagtacact
ccggagcaggcacatgctgtccaactgattcagctgggctccatgccccagtactattac
caagagtcccaacagccctacagccaccctctctaccagcagagccacctgcctcagcac
cagcagcgggaagacagtcagctgaagacgttttctagcgacaggcaggcacaggccatg
ctgagttctcacggggacctgggccctcctgacacaggaatgggagactcaaccagctca
gacctgcctcgggtcagcagtgccctcccccaccgaccgctcctgtcccccagcgggatg
cacctcaatagcctggggccacagcatcagcaggcgtctcccagtgccgtgtggccccag
atgcacctccctgacgggcgagcccagccgggatcccctgaatcaagtggccaagccaaa
ggagtgtttggggagcagtttgatgccaagaacaagctgtgccccatctgcctaaaggag
tttaagagcctgcctgccctgaacggccacatgcggtcgcacgggggaatgagggcctcc
cccagcctcaaacaggaggaaggagagaaggccccgccgccagcgccacagcctccgcct
ccgcctcctcagccccagccgccccagccgccactgccacctcctccacctccgcctccg
cctccgcccgcacctgcaccgccgcagcttcctcccgaggccgaaagcctcacacctatg
gtcatgcccgtgtctgtccctgtcaagcttctcccgcccaagcacagctctcaggggttc
accaacagcgtcgctgccgcccccgccgccgccagagacctgccggccagctccgtgtcc
gacgatgagatgcccgtgctcgtgaggatgaccctctctcccccacactcccccccaggg
gctgccccccgcacgcctgctgaaatccccaggaagcttcaacccggagcgccgaaaccg
gaagagccccccaagacggtgcaggagaagaaaaagttccggcaccgtccggagcccctc
ttcatcccgccgccaccttcttacaacccaagcccagcctcctattcaggcgccactttg
taccagagccaactgcgctccccgcgcatcctcggagaccacctgctcctcgatcccaca
cacgagctgcccccctacacgccgccgcccatgctgagcccggtgcgccagggctcgggg
cttttcagcaacgtcctcatctccggccacggcaccggcgcccacccgcagctgcccctc
acgcccctcacgcccacgccgcgggtgctgctgtgtcgttccaacagcattgatggcaac
aatgtgacagtcactccagggcctggagaacagaccgtggatgttgaaccacgcatcaac
attggcttgagattccaagcagagattccagaactccaggatgtctcttccctggctcag
gacaaacacaaagccacactggtgtggaagccctggccagagttggaaaaccatgacctt
cagcaaagagtggagaatcttctgaatttgtgctgttccagtgcattgccaggtggaggg
accaattctgaacttgctttgcactctctctttgaggccaaaggtgatgtgatggctgcc
ctggaaatgctgctgctgcggaagccagtcaggttaaaatgccatcccttagcaaattac
cactatgccggttcggacaagtggacatctctagaaagaaaactgtttaataaagcacta
gccacttacagcaaagactttatttttgtacaaaagatggtgaagtccaagaccgtggct
cagtgtgtggagtactactacacatggaaaaaaataatgcgattggggcggaagcaccgg
acacgcctagcggaaatcattgatgattgcatgacgagtgaagaagaagaagagttagag
gaggaggaggaagacatggaagaagataggaaatccacgaaagaagaggagactgaagtg
ccgaagaccccagagcccccaccggtgcccatcctggctcccaccgaggggccacccctg
caggcccttggccacccaccaggctccttcatctgtgaaatgcccaactgcggagccgtg
ttcagctctcgacaggccctcaacggccacgctcgcatccatggcggcaccaaccaggtg
accaaggctcggggtgccatcccctctgggaagcagaagcccgggggagcccagagcggc
tactgctcggtgaagagctcaccctctcacagcaccaccagtggtgaaacagaccccacc
accatcttcccctgcaaagagtgtggcaaggtcttcttcaagatcaaaagccgaaacgcg
cacatgaaaacccacaggcagcaggaggaacagcagagacagaaggcacagaaggcggct
ttctcggccgaaatggcagccacgatcgagaggactacaggggcacctgggctgctgccc
ctggaccagctgagtctgatcaaacccgtgaagaacgtggatgtcctagaccaggaggtg
gtgcagcagctgggcggcgtggaggaggccgagggcgtggacaccgacctgctcctggac
gatcaggattcagtgctgctgcagggggacacagaactctag
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