Ochotona princeps (American pika): 101529830
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Entry
101529830 CDS
T07609
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101529830 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
opi04131
]
101529830 (VPS8)
Membrane trafficking [BR:
opi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101529830 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps8
Clathrin
zf-RING_11
zf-C3H2C3
zf-RING_2
zf-RING_UBOX
zf-RING_5
HOIP-UBA
zf-C3HC4
ANAPC4_WD40
PHD
Motif
Other DBs
NCBI-GeneID:
101529830
NCBI-ProteinID:
XP_036350792
LinkDB
All DBs
Position
14:40940415..41231079
Genome browser
AA seq
1429 aa
AA seq
DB search
MANEPDQESVEQTLCAKTTEEELNKTFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDAIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALVFGK
DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
HPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
VQNSVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDS
VEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSH
GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
RKAVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQAIDACNVPKIIFSPFYFRDLLF
SQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLLVHFQDKKLMENVEALIVH
MDITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQ
VVMGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVR
TLLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFL
ARQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIR
MAEKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEIFNYIHNILSIPGHSAEEKQSVW
QKAMDHIEELVSLKPCKAAELVATHFFGQIEAVIKTIQNQVLLFKFLRSLLDPREGIHVD
RELLQISPSITEQFIELLCQFSPDQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEK
KGDIHGAFLIMLERLQNKLQEITHQGENTKEKTSLKGVEDTMVETIALCQRNSHNLNQQQ
REALWFPLLEAMMAPQKLTSPTAPPLHAEALKSLTMQVLNSMAAFIALPSILQRILQDPV
YGKGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYC
SICLQQYKRRHEVADEIIVFSCGHLYHSFCLQSKECTIEIEGQTRWTCYKCSSSNKVGKL
SENASEMKKGRITASQVKMSPYHPPRGDPATKKATSEPVLDPQQFQAFDQLCRLYRGSSR
LALLTELTQNRGSESYRLISGSQGGSAFSSIFQNENFQLQLAPPPVTED
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgaaccagaccaggaaagtgtggagcagaccctctgtgccaagactactgaa
gaagaactgaataagactttcaatctagaggcttcactttcaaaattctcttacattgat
ctggacaaggaactggagttcaaaaatgatttgattgatgacaaggagttcgatattcct
caagttgatacacctccaactctggaaagcatactaaatgagactgatgatgaagatgag
tcctttgttcttgaggatcctacattgttaaacatcgatgctatcgattctcactcctat
gatacttcatctgtggctagctctgatagcggtgacaggaccaacttaaaaaggaagaaa
aaattacctgattctttttcactccatggatcagttatgcgacattctcttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtccagtctcatagcagtgggaacatctcatggactggctttagtatttggaaaa
gatcagaatcaggctttgcgcctctgtctgggtagcaccagcgttggaggacagtatgga
gccatctctgccctcagtatcaacaatgattgctcaagacttctctgtggctttgctaaa
gggcagatcaccatgtgggatttggccagtggaaaactactaagatcaataacagatgct
catcctccgggaacagctatattgcatatcaagtttacagatgatccaactcttgccatt
tgcaacgacagtggaggctctgtttttgaactgacatttaagagagtaatgggagtgaga
acatgtgaatctaggtgtctcttcagtggttccaagggtgaagtttgctgtattgagcct
ctgcactctaagcccgaattgaaggatcatcccatcacccagttttcattgttggccatg
gcatccttaacaaaaatactggtcattggattgaaaccatccttgaaagtgtggatgacc
tttccctatggacggatggatccctccagtgtcccactgctggcctggcactttgtggct
gtgcaaaatagtgtgaatcccatgcttgccttctgcagaggagatgttgttcattttctg
ttggttaaaagagatgagtctggagcaatacatgttaccaagcaaaagcatcttcacctg
tactatgacctcatcaacttcacttggataaactcacgaacgatagtgctgttagacagt
gtggagaagttgcatgtgattgatcgacagacgcaagaggaactggaaacagtagagatc
tcagaagttcagctggtctataatagcagccatttcaaatcattggccacaggaggaaat
gttagccaggcactggccttggttggagagaaggcttgctatcaatccatcagtagccac
ggtggtcagatcttttatctggggacaaaatctgtttatgtgatgatgctgagaagctgg
agagagagagtggatcatcttctgaaacaggattgtctcacagaggccttggctcttgca
tggtctttccatgaaggaaaagcaaaagcagtagtaggattatcaggggatgccagcaag
cgaaaggctgttgtggcagatcggatggtggaaatcctgttccattatgcagatcgagct
ctgaagaagtgcccagaccaggggaaaatccaagtgatggaacagcattttcaggcaata
gatgcttgtaatgttcctaaaattattttttctcctttctattttagggaccttttattt
agccagatgtatgacaagttaagtgagaattcagtggccaaaggagtgtttttggagtgc
cttgagccctatattttaagtgataaattggtgggcatcacaccccaggtcatgaaagac
ttgcttgttcatttccaagataagaagttaatggaaaatgtggaagccctcattgtacat
atggatatcaccagcctagatattcagcaggtggttctcatgtgttgggaaaatcgtctg
tatgatgctatgatctatgtctacaacagaggcatgaatgagtttattagtccaatggag
aaacttttcaaagtcattgctcctcctttgaatgcaggaaagacactaacagatgagcaa
gttgttatgggcaacaagcttctcgtatatattagttgttgtctggcaggtcgtgcctat
ccattgggtgacatccctgaagatcttgttcccttggtgaaaaaccaggtgtttgaattt
ctaattcgccttcactctgcagaagcttcccctgaggaagaaatctatccttatgtccga
actctgctacattttgacacaagagaatttcttaatgtgttggcattgacttttgaagat
tttaaaaatgacaagcaagctgtggaatatcaacagcgaattgtggatattttgttgaaa
gttatggtagagaattctgattttactccatctcaagtaggatgtctctttacatttctc
gctcgtcaacttgcaaagcctgacaacaccttgtttgtaaacagaacactttttgatcag
gtccttgaattcctctgtagtcctgatgatgactctcgtcactctgaaagacagcaggtc
cttttggaattgctgcaggctgggggcatagttcaatttgaagagagtcgcctcatccgc
atggcagaaaaagctgagttctaccaaatttgtgaatttatgtatgaacgtgaacatcag
tatgacaaaattattgactgctacttacatgacccactgagagaggaggaaatctttaat
tacatccacaatatcttatccattcctggacacagtgcagaggagaagcagtctgtgtgg
cagaaagcaatggatcacattgaggaacttgtgtccctgaagccctgtaaagctgcagag
ctggttgctacccacttttttggacagattgaagcagtcattaaaacaattcagaaccag
gtgttgcttttcaaatttttgagaagtcttcttgacccaagggaaggtattcatgtagat
cgagaattgctgcaaatatctcccagtattacagagcagttcattgaactgttatgtcag
ttcagcccagaccaggttatagagaccctgcaagttcttgagtgctaccgcctagaggaa
actattcagattactcagaagtatcagcttcatgaggtcactgcatatcttttggaaaag
aaaggagatattcatggtgcctttttaataatgctagagagactacaaaacaaacttcaa
gagataactcatcaaggtgagaataccaaagaaaagacctccttgaagggtgtggaagat
accatggtagagaccattgctctttgccagagaaattcacataatttgaaccagcagcag
cgggaggcactgtggtttccgttgttggaggcaatgatggcccctcagaagctgaccagt
cccactgcccctcctctacatgccgaagctctgaaatccttgaccatgcaagtcctaaac
agtatggcagcttttattgcccttccatcaatcctgcaaagaatcttacaggatccagtt
tatggaaaaggaaaacttggagaaatccagggacttattctgggaatgttagataccttt
aactatgagcagactctactggaaacaacaactagcctcttaaaccaagacctccattgg
tcactgtgtaacctgagagcttcagtcaccagaggactgaatcccaaacaggactactgc
tctatatgcttgcagcagtacaagagacgccacgaggtggctgatgaaattattgtcttt
agctgtggccatttgtatcactcattctgtctacaaagcaaagaatgcaccatagaaatt
gaaggccaaacaaggtggacatgttacaaatgcagctcaagtaacaaagtaggaaaacta
agtgaaaacgcatctgaaatgaaaaagggaaggataactgcatcacaggtaaaaatgtct
ccatatcacccacccagaggggatcctgccactaagaaggcaacctcagagcccgtcctg
gacccacagcagttccaagcattcgatcagctgtgccggctctaccgagggagttccagg
ctggccctcctcacagagctcacccagaaccgtggcagcgagagctacaggctcatcagt
ggctcccagggcggctctgccttcagcagcatcttccagaacgagaacttccagctgcag
ctcgcgcccccaccggtgactgaggactga
DBGET
integrated database retrieval system
