Ochotona princeps (American pika): 101533744
Help
Entry
101533744 CDS
T07609
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
101533744 (TRPA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
opi04040
]
101533744 (TRPA1)
Ion channels [BR:
opi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
101533744 (TRPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
101533744
NCBI-ProteinID:
XP_004588168
LinkDB
All DBs
Position
3:23210865..23273767
Genome browser
AA seq
1117 aa
AA seq
DB search
MKRSLRKMLHAGEKKPPPVVGYHGVENGVDDCKNFEVVFGGDACGFQKFTKNRRKLSKQD
ENDSPLHHAAAEGRVELMEMIVSDSSFEAVNMMDDYGNTPLHWATEKNKVESIKFLLSKG
ANPNVQNNNMMAPLHVAVQNMYNEVVKILTDYSGTDIDLEGENGNTAVITACSKDNSEAL
EILLKKGARICKANKWKCFPVHHAAFSGAKKCLELLLEYGEKLGYRREYQINFVNTRNAS
PLHFAVQSGDLEMIKLCLDNGARIDQKENAKCTALHFAASQGATEIVKLMISSYSGTSDI
VNAVDGNHETLLHRASLFDHYELAEYLVSVGADVNITDAEGRSPLMSATASASWNVVNLL
LSKGAHVHIKDHHGRNFLHLTVQQPYGLKNLQPEFMQMQHIKELVMDEDNDGCTPLHYAC
RQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQGISDTRLLNEGDLN
GMTPLHLAAKNGHDKVVQLLLKKGALFINDHNGWTALHHASLGGYTQTMKVILDTNLKCT
DRLDEEGNTALHFAAREGHAKAVALLLKYDASIVLNKQQASFLHVALHNKRKEVVLMTIR
NKRWDECLKVFSHYSPTNRCPIMEMVEYLPECMKVLLDFCIIPSTGDKSCRDYHIEYNFK
YLHCPLALTKEKAPVQDVTYEPLPILNVMVQHNRIELLNHPVCKEYLLMKWFAYGFRAHM
MNLGSYCLGLIPMTMLVVNIQPGMAFNSTGIINETSDHSEILDTTNSYPIKVCMILVFLT
SIFGYCKEVAQIFQQKKNYFMDYGNAVEWIIYTTSMIFVLPLFVSIPAYAQWQCGAIAIF
LYWMNFLMYLQRFEYCGIFIVMLEVILKTLLRSTVVLLFLLLAFGLSFYVLLSTQDAFKT
PLLSIIQTFSMTLGDINYRDAFLEPYLRSELTYPTLSFAQLIAFTMLVPIVLMNLLIGLA
VGDIAEVQKHASLKRIAMQVELHTSLEKKLPVWFLHKVDQESTIVYPNRPRCEGMFACIL
QYIFCTKETRQEVPNTDKCLEIEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISETED
EDNHCSFQDKFKREQLEQMNSKWNSVLRAVKTKMHNA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagcctgaggaagatgctgcatgctggggagaagaagccgccgccggttgtt
ggctaccatggcgtggagaacggcgtggacgactgcaaaaactttgaggtggtgtttgga
ggagatgcatgtggattccaaaagtttaccaagaaccgaagaaaattaagcaaacaggat
gagaatgactcccccctgcatcacgcagcagcagaagggcgagtggagctgatggagatg
atcgtcagtgactcctcttttgaagcggtgaatatgatggatgattatggaaacacacct
ctgcattgggccacagaaaaaaacaaagttgaaagtattaagtttcttctcagcaaagga
gcaaacccgaatgtccaaaacaacaacatgatggcgcctcttcatgtagcggtgcagaac
atgtacaacgaggtggtgaagatcttgactgactacagtggaacagatattgatttggaa
ggagaaaatggaaacacagctgtgataaccgcatgctctaaagataacagtgaagcattg
gagattctgttaaaaaagggtgcaaggatatgcaaagcaaacaaatggaaatgtttccct
gttcaccacgctgcattttcaggtgctaaaaaatgcttggaattattactggagtatggt
gaaaaacttggatatcgcagagagtatcagataaactttgtgaacactcgaaatgccagc
ccgctccattttgcagttcagagtggtgatttggaaatgattaaattgtgcctggacaat
ggtgcgcgcatagaccaaaaagagaatgcgaagtgcacggcccttcattttgctgccagc
caaggagccactgagattgttaaactgatgatatcatcctattccggtaccagtgacatt
gttaatgcagtcgatggcaatcatgagaccctacttcatagagcttcattatttgatcac
tatgaactggcagaatacttagtatcagtgggagctgatgttaatatcactgatgctgaa
ggacgctctccacttatgtcagcaactgcttctgcatcttggaatgtcgtaaacttactg
ctttctaaaggtgctcatgtacacataaaagatcatcatgggcgtaactttttacatttg
actgtgcagcaaccttatggattaaaaaatttgcaacctgaatttatgcagatgcaacat
attaaagagttggtgatggatgaagataatgatggatgtactcctctacattatgcctgt
agacagggcgtccctgtctctgtaaataacctactgggcttcaatgtgtcgattcattcc
aagagcaaagataagaaatcacccctgcactttgcagccagttacggacgcatcaatacc
tgtcagagactgctccaaggcatcagtgatacgcggcttttgaatgaaggtgatcttaat
gggatgacgcctctacatctggcagcgaaaaatggacacgataaagtggttcagcttctc
ttgaaaaaaggcgcattatttatcaatgaccacaatggctggactgctttgcatcatgct
tccttgggtggctacactcagaccatgaaggtcattcttgacactaacttgaagtgtaca
gatcggctagatgaagaagggaacacagctcttcactttgctgcaagggaaggccatgcc
aaagccgtggcacttcttctgaaatatgatgccagcatagttctgaacaagcagcaggcc
tcctttctgcacgtggcacttcacaataaaaggaaggaggtggttctcatgaccatcaga
aacaaaagatgggatgaatgtttaaaggtatttagtcattattctccaaccaatagatgt
ccaatcatggaaatggtagaatatcttcctgaatgcatgaaagttcttttagacttctgc
attataccttccacaggggacaaatcctgccgagattatcatatcgaatataattttaaa
tatcttcactgcccattagcattaaccaaggaaaaggcacctgtgcaggatgttacatac
gagcctcttccaatcctcaatgtaatggtacagcataaccgtatagaacttctcaatcat
cctgtgtgtaaagaatatttgcttatgaaatggtttgcttatggatttagagcccatatg
atgaatcttggatcttactgcctcggtcttatacccatgactatgcttgttgtcaacata
cagccaggaatggcttttaactcaactggaatcattaacgaaactagtgatcactcagaa
atactagataccacgaactcatacccaataaaagtttgtatgattttagtttttttaaca
agtatatttggatactgcaaagaagtggcccaaattttccaacagaaaaagaactacttt
atggattatggtaatgcagttgaatggattatctacacaaccagcatgatttttgtgttg
cccttgttcgttagcatcccagcctatgctcagtggcagtgtggagcaattgcaatattc
ttatattggatgaacttcttaatgtatcttcaaagatttgagtattgtggaattttcatt
gtgatgttagaggtaattctgaagactttgttgaggtctacagtggtgttgctcttcctc
cttttggcttttggactcagtttttacgtcctcctgagtacacaggatgccttcaaaacg
ccattgctttctataatccagaccttcagcatgacattaggagatatcaattatcgagat
gccttccttgagccctatttgagaagtgaattgacatatccaactctgtcctttgcacaa
cttattgccttcacaatgttagtcccaattgtcctcatgaatttacttattggtttggca
gttggtgacattgctgaggtccaaaaacatgcatcactgaagagaattgccatgcaggtg
gaacttcacaccagcttagagaaaaagctaccagtctggttcctacacaaagtggatcaa
gaatccaccatcgtgtatcccaacagacccagatgtgagggcatgtttgcatgtatactt
caatatattttttgcactaaagaaaccagacaagaagtgccaaatactgataaatgttta
gaaatagaaatactgaagcagaaataccggctaaaggatctaacttctctcttggaaaaa
cagcacgagctcattaagcttatcatccagaagatggaaatcatctctgagacagaggat
gaagataaccattgttcttttcaagacaagttcaagagagagcagttggagcaaatgaat
agcaaatggaattctgtgttgagagcagtaaagacaaaaatgcacaatgcttag
DBGET
integrated database retrieval system
