Ochotona princeps (American pika): 101536248
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Entry
101536248 CDS
T07609
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X3
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04140
Autophagy - animal
opi04148
Efferocytosis
opi05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101536248 (VPS11)
04148 Efferocytosis
101536248 (VPS11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101536248 (VPS11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
opi04131
]
101536248 (VPS11)
Membrane trafficking [BR:
opi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101536248 (VPS11)
Hops complex
101536248 (VPS11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
zf-RING_UBOX
zf-RING_5
TPR_11
DLP_helical
zf-RING_11
zf-HC5HC2H
zf-C3HC4_3
zf-RING-like
zf-ANAPC11
DUF5847
Motif
Other DBs
NCBI-GeneID:
101536248
NCBI-ProteinID:
XP_004585207
LinkDB
All DBs
Position
1:39306217..39321036
Genome browser
AA seq
941 aa
AA seq
DB search
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGTVPAAGSAASKFLSLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
VLHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTG
QDSQSSDKQILNVYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALQYIGKLPFEQ
AESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSTEGRGDREAPGCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGVYDTLLELRLQNWAHEKEPQVKEKLHAETISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQDPSLW
EQALSYFARKEEDCKEYVAAVLKHIETRNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPSARLTPGLEAGLQRDLLVHSRRGT
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctacctgcagtggcggcgtttcgtcttcttcgacaaggaactggtgaaggaa
cctttgggcaatgatggggcagctcccgggaccgtgcctgctgctggatccgctgcttcc
aagttccttagtctccctcctggtatcactgtttgcgactcgggccgcgggagcctggtg
tttggagatatggaaggccagatctggttcttgccacgctccctacagctcacaggcttc
caggcctacaaactacgggtgactcacctgtaccagctgaagcagcacaacatcctggca
tctgtcggtgaggatgaagagggcatcaaccctctggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcgcatcttccctgccatccctggaacagagcca
actgtcgtgtcttgtttgactgtccatgaaaacctcaacttcatggccatcggtttcaca
gatggcagtgttaccctgaacaagggagacatcacccgggaccgacacagcaagacccag
gttttgcacaagggcaactatcctgttactggcctggcctttcgccaagcaggaaaaact
acccacttgtttgttgtgacaacagagaatgtccagtcttacatcgtgtctggaaaggac
taccctcgtgtggagttggacacccatggctgtggcctgcgctgctcagccctcagcgac
ccctctcaggacctgcagttcatcgtggctggagacgagtgtgtctacctgtaccagcct
gacgagcgtgggccctgcttcgcctttgagggccataagctcattgcccattggtttcgg
ggctaccttgtcattgtctctcgtgaccggaaggtttcccccaagtcagagtttaccggc
caggactcacagagctccgacaagcagattctcaacgtctatgacctgtgcaacaagttc
atagcctatagcgctgtctttgaggatgtagtggatgtgcttgctgagtggggttccctg
tacgtgctgacgagggacgggcgggtccacgcactgcaggagaaggacacccagaccaaa
ctggagatgctatttaagaagaacttatttgaaatggcaattaacctggccaagagccag
catttggacagtgatgggctggcccagatcttcatgcaatatggagaccatctctacagc
aagggcaaccacgatggggctgtccagcagtacattcgaaccattgggaagttggaacca
tcctatgtgatccgcaaatttctggatgctcagcgtatccacaacctgaccgcctacctg
cagaccctgcaccgacagtctctggccaatgccgaccatacgaccctgctgctcaactgc
tataccaagctcaaagacagctccaaactggaagagttcatcaagacgaagagcgagagt
gaagtccactttgacgtggaaacagctatcaaggtcctccggcaggctggctactactcc
cacgccctctacctggcggagaaccatgcccatcatgagtggtacttgaaaatccaactc
gaggacattaagaattaccaggaggcgcttcagtatatcggcaagctgccattcgaacag
gcagagagcaacatgaagcgctatggcaagatcctcatgcaccacatcccggagcagacg
acccagctgctgaagggactctgtactgactataggcccagtacagaaggccgaggtgac
agggaggctccaggctgcagggccaactcggaagagttcatccccatctttgccaacaac
ccgcgagagctgaaagccttcttggagcacatgagtgaggtgcagccagactccccccag
ggtgtctacgacacactccttgagctgcgcctgcagaactgggcccacgagaaggagccc
caggtcaaagagaagcttcatgcagagaccatctccctgctgaagagtggccgcttctgt
gatgtgtttgacaaggccttggtcctgtgccagatgcatgacttccaggatggcgtcctt
tacctctatgagcagggcaagctgttccagcagataatgcactaccacatgcagcatgag
cagtaccggcaggtgatcgctgtgtgtgagcgccacggcgagcaggacccctccctctgg
gaacaggccctcagctacttcgcccgcaaggaggaggactgcaaggagtatgtggcggct
gtgcttaagcacatcgagaccaggaacctcatgccacccctcctagtggtgcagaccctg
gcccacaactccacagctactctgtcagtcatcagggactacttggtgcagaaactgcag
aagcagagccagcagatcgcccaggatgaactgcgggtgcggcgataccgagaggagact
acacgcatccgccaagagatccaggaactcaaggcgagtccaaagattttccagaagacc
aaatgcagcatctgcaacagtgccttggagttgccctctgtccacttcctgtgcggccac
tccttccaccagcattgcttcgagagttattctgaaagtgatgccgactgccccacctgc
ctcccagaaaaccggaaggtcatggatatgatccgggcccaggaacagaaacgagacctc
cacgatcagttccagcaccagctcaagtgttccaatgacagcttctccgtcattgctgac
tactttggcagaggtgtgttcaacaaactgactctgctgaccgaccctccctcagccaga
ctgacccctggcctggaggcagggctgcagcgggacctgctcgtgcactcccggaggggc
acttaa
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