Ornithinimicrobium ciconiae: FNH13_16180
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Entry
FNH13_16180 CDS
T06094
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
orz
Ornithinimicrobium ciconiae
Pathway
orz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNH13_16180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orz03021
]
FNH13_16180
03019 Messenger RNA biogenesis [BR:
orz03019
]
FNH13_16180
Transcription machinery [BR:
orz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FNH13_16180
Messenger RNA biogenesis [BR:
orz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FNH13_16180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
SAP
Spore_III_AA
NACHT
HeH
ResIII
AAA_25
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
QDO89683
UniProt:
A0A516GDS5
LinkDB
All DBs
Position
complement(3487492..3489660)
Genome browser
AA seq
722 aa
AA seq
DB search
MTNTTETAAPSRSGGALSSMRVAELQALAGSMGITVSPKMRKADLVEAIRARREGGSTSV
KTSAPAREAAPREAAPQTSDNTAAGQDSGSAASQDSSPAASQDSSPAESGQRAPRRSRRV
AAAAGAPQSRAGRSGADESAESAPAQAPATEAGATEVGGTEARQDRQESGGNADSGQDRS
RRGNRQQDGGQQDNRQDNRQDGDQQDNRQQGNRGNKQGGNQQDNRQDGNQQDHRQQGNRG
NQQGNRQGGNQQDNRQDGDQQDNRQQGNRGNQQDNRQGGNQQGGNQNRTNNRFDDDDEGG
RGGRRRSRQRGRDRKRGRSQGGESYAEEQETGYTEEDVLVPVAGVLDILDNYGFIRTTGY
LPGPSDVYVPMGLVRKNGLRKGDAVTGAIKAGDQQQHSGGRGDRQKYNALVRLDTVNGKA
PEESKDRPEFAKLTPLYPQDRLRLETEQKNLTTRMIDLVSPIGKGQRGLIVSPPKAGKTL
VLQSIANAITQNNPEAHLMIVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELA
IERAKRLVELGGDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSSALYPPKRFFGAARN
IEFGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRQLADRRIFPAIDVNPSGTR
REEILMGAEELKIMWKLRRVLSALDSQQAVELLLDRLRKTKTNHEFLVQVQQTSSVKLDD
ED
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaacaccaccgaaaccgctgcgccgagtcgctccgggggggccctgagctcgatg
cgcgttgccgagctgcaggctctggccggcagcatgggcatcaccgtgtcgcccaagatg
cgcaaggcggacctcgtcgaggcgatccgtgctcgtcgggagggcggcagcacgtccgtc
aagaccagcgctccggcgcgtgaggctgccccccgtgaggctgccccgcagaccagcgac
aacaccgccgcagggcaggactccggctccgcggcgtcgcaggacagtagccccgcggcg
tcgcaggacagcagtcccgcagagtccggacagcgtgccccccggcggtcccgccgggtc
gctgctgccgctggtgcaccgcagtctcgcgccggtcgctccggcgccgacgagagtgct
gagagcgccccggcccaggctccggcaaccgaggcgggtgcgaccgaggtcggtggcacc
gaggctcgtcaggaccgccaggagtcgggcggcaacgctgacagcggtcaggaccgtagc
cgccgtggcaaccgccagcaggacggcggccagcaggacaaccgccaggacaaccgtcag
gacggggaccagcaggacaaccgccagcagggcaaccgtggcaacaagcagggtggcaac
cagcaggacaaccgtcaggacgggaaccagcaggaccaccgccagcagggcaaccgtggc
aaccagcagggcaaccgccagggcggcaaccagcaggacaaccgtcaggacggggaccag
caggacaaccgccagcagggcaaccgtggcaaccagcaggacaaccgccagggcggcaac
cagcagggcggcaaccagaaccgcaccaacaaccgcttcgatgacgacgacgagggcggc
cgtgggggccgtcgtcgcagccggcagcggggccgcgaccgcaagcgcgggcgcagccag
ggaggggagagctacgccgaggagcaggagaccggttacaccgaggaggacgtgctcgtc
ccggtggctggtgtcctggacatcctggacaactacggcttcatccgcaccaccggctac
ctgcccggccccagcgacgtctatgtcccgatgggcctggtccgcaagaacggactacgc
aagggtgacgccgtcaccggtgccatcaaggcaggggaccagcagcagcactccggtggt
cgtggtgaccgccagaagtacaacgctctggtgcgtctcgacacggtcaacggcaaggcc
ccggaggagtccaaggatcgtccggagttcgccaagctgaccccgctctatccccaggac
cggctgcgcctggagaccgagcagaagaacctgaccacgcggatgatcgacctggtctcc
ccgatcggcaaggggcagcgcggcctgatcgtgtcccctccgaaggccggcaagaccctg
gtgctgcagtcgatcgccaacgcgatcacgcagaacaaccccgaggcgcacctcatgatc
gtcctggtggacgagcgccccgaggaagtcaccgacatgcagcgcacagtcaagggtgag
gtcatcgcctccaccttcgaccgtcccgccgaggaccacacgacggtggccgaattggcc
atcgagcgcgccaagcgcctggtcgagctcggtggcgacgtggtcgtgctgctcgactcg
atcacccgcctgggccgtgcctacaacctggccgccccggccagcggccggatcctctcc
ggtggtgtcgactccagtgcgctctatccgccgaagcgcttcttcggtgctgcccgcaac
atcgagttcggcggctcgctgaccatcctggcgaccgcgctcgtggagaccggctccaag
atggacgaggtcatcttcgaggagttcaagggcaccggcaacatggagctgcgtctgtcc
cgccagctggcggaccgccgcatcttcccggccattgacgtcaacccctccggcacgcgc
cgcgaggagatcctgatgggcgccgaggagctcaagatcatgtggaagctgcgtcgcgtg
ctctccgcgctcgactcccagcaggctgtcgagctgctgctcgaccgtctccgcaagacc
aagaccaaccacgagttcctggtccaggtgcagcagacttcctcggtcaagctggacgac
gaggactga
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integrated database retrieval system
