Oryza sativa japonica (Japanese rice) (RefSeq): 107277028
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Entry
107277028 CDS
T01015
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107277028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
107277028
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107277028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
107277028
NCBI-ProteinID:
XP_015623860
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Position
2:26232001..26239229
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AA seq
1044 aa
AA seq
DB search
MEMEVEVEVRSDDNDHGNGGIRGEGGGTDDVAEIEEEELGTDEDETSDDSDENFSDEEGD
EEELEEEEEEEEEEEDDDDDDEEEEEPGDAPDQPGEAGEESPPRSRIMAMPLMGKRMFEG
FSFLQQVDTSTGRDIRARTRSNFKRKKLLDKKLLKRGTFAKPYCIDVSSSGSEEDVPQPE
QSAYGGDCADDDGGSDGNEEHRAVKRRKLNRRQSAHSDSEEDTTFVCDVKEGSGSRRVQE
GAPRRQVKKEGSNKKKDGSTPQCVRNNGPKVGRQTNGLNGQGGVSFKRNVKIAQRRKRRQ
ATADQEKYGHLLDPMFNEIESNQYEPVPEEQIDRRLPLVFAFGDDDKLEEKSKHDKLQDE
DELWKEFDFALESINVCSHNCEEGEKEDEQEIPADKAASCIQGKHELIIDEQIGLRCKHC
NFVDLEIRFVLPSMVKSCTERDMRKDHELDLFFDDILTSAGYEGPRDFGGKKTGLVWDLV
PGVREDMFPHQQEGFEFMWRKLAGGTSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFV
QSYFAFFPECCPVIIAPRGMLATWEQEFRKWKVKVPFHVLNSKEINWKEDRTIKQLAIMD
ENLAQSLARNKLDHKFRRKLKLASWRKGSSIIGVSYTLFRKLANQSSMDGNMVRNLLLEM
PDLLVLDEGHTPRNKKSLIWKVLEEVRTKKRIILSGTPFQNSFLELSNVLYLIRPKFARH
FASKSFKKIGLEDYWTSLTLNNITEKKIDEIRQILDPIVHIHNGDILQKSLPGLRESVVI
LNPLPHQKEIITAMENTVTMGTLDAEYKISLASIHPFLVTCAKLSEKETSSVDVSLLKSL
RPNPCVGVKTKFVLEIVRLCEAMKERVLVFSQYLEPLSLIMDQLSKMFNWIEGEEILLMS
GNVLVQNREALMEAFNDMKSNAKVMLASTKACCEGITLIGASRVVLLDVVWNPSVGRQAI
GRAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFSKEPHAAGFNLSQEVIFN
DKILEAMTSHRELKDMFVKILHSH
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaggtggaggtggaggttcgttcagatgacaacgatcatggcaatggtgga
atcaggggagaaggtggaggtacggacgatgttgcggagatagaggaggaggaattgggt
acggatgaagatgaaaccagtgatgatagcgatgagaacttcagcgatgaggaaggggat
gaagaggaattggaggaggaggaggaggaggaggaggaagaagaagatgatgatgatgat
gacgaggaggaggaggaaccgggtgatgcacctgatcaaccgggtgaggccggtgaggaa
tctcctccccgatcaagaatcatggcaatgccgctgatgggaaagaggatgtttgaggga
tttagttttctacaacaggtggacacctcgactggcagggatatcagagctcgcacacga
tcaaatttcaaacgcaagaaactcctggacaagaaactgctcaagcgtgggacgttcgcg
aagccttattgtatcgatgtgtctagctcggggtcggaggaggatgtgccacagccggag
cagtcggcgtacggtggggattgtgcggatgacgatggcggcagcgatggcaatgaggag
catagagctgtgaagaggaggaaattgaacaggaggcaaagtgcccatagtgatagcgag
gaggatacaacatttgtatgtgatgtcaaggaaggatcaggttctaggagggtacaagaa
ggagcacctcgtaggcaggttaagaaggagggttccaacaagaaaaaggatggctccact
ccacaatgcgtcagaaacaatggaccaaaagttgggagacaaacaaatgggctcaatgga
cagggtggtgtatccttcaagagaaatgtaaagattgctcagaggaggaagcgcaggcaa
gcaacggcagaccaagaaaagtatggtcatttgctcgaccccatgtttaatgaaatagag
agcaaccaatatgagcctgttcctgaagagcaaattgacaggagattgcccctggtattc
gcatttggggatgacgataagctggaagagaaatccaaacatgacaagttacaggatgaa
gatgaactgtggaaagaatttgattttgctttggaatccataaatgtttgttctcacaac
tgcgaggagggtgaaaaggaagatgagcaagaaatccctgcggacaaagcagcttcatgc
atccaagggaagcatgagctcattattgatgagcaaataggacttcgatgcaagcactgc
aactttgttgatcttgaaatcagattcgtacttccctccatggtaaagtcctgtactgaa
agggacatgagaaaagatcacgagttagacttgttttttgatgatatcctaacatcagcg
ggatatgaaggaccacgtgattttggtggtaaaaagactggcctggtttgggatctagtt
cctggggtccgggaggacatgttcccgcaccagcaagaaggttttgagttcatgtggaga
aaactagcaggggggacttcaattgaacagctgaggaacaatgcaaacactattgaaggt
ggctgtgtgatttctcatgcaccagggacagggaagaccagactagcaatcacatttgtt
caatcctactttgcgttttttcccgagtgctgtccagtgataattgctcccagagggatg
cttgctacatgggaacaggagttcagaaaatggaaggtgaaggtcccttttcatgtattg
aactccaaggagattaactggaaagaagacaggaccatcaaacagctggctatcatggat
gaaaatttggcccaaagtttggctagaaacaaattggatcacaaatttaggcgaaagttg
aagttggcatcatggcgtaaagggagcagtataattggtgtgagctatacgcttttcagg
aaactagcgaaccagagcagcatggatgggaacatggtgaggaatctgctccttgagatg
cccgacttgttggtccttgatgaagggcacacaccaaggaacaagaaaagtctcatatgg
aaggttcttgaagaagttcgcaccaaaaagcgaataattctatctggtactccatttcag
aatagctttcttgagctctctaatgtcctgtacctgattagaccaaagtttgcaagacac
ttcgcttctaaaagtttcaagaaaataggccttgaggattactggacatccttgacactg
aataacataacagagaaaaagatagatgaaatccggcaaatactcgatccaattgtgcac
atccataacggtgacattcttcaaaagtctcttccaggattgagagaatcagttgtgatt
ctgaatcctcttcctcatcaaaaggaaatcatcacagcaatggagaacacagtgacaatg
gggactcttgatgcagaatacaagatctcccttgcatctatacacccgttcctcgtcaca
tgtgcaaaactgtcggaaaaagaaacatcttctgtggatgtctctttgctgaagagctta
cggccaaacccgtgcgtaggagtcaaaacaaaatttgttttggaaattgtccgtttgtgt
gaagccatgaaagagcgagtacttgttttcagtcaatatcttgaaccactatctctgatc
atggaccaacttagtaaaatgttcaattggatagaaggtgaggagatcctactgatgagt
ggaaatgtccttgttcaaaatcgagaagctttgatggaggccttcaatgacatgaaaagc
aatgccaaggtaatgcttgcatcaacgaaggcatgctgtgaaggcattacacttatcggg
gcatcacgtgtggttctccttgatgttgtatggaacccttcagttggaaggcaggcgatt
ggccgagcttatagaattggtcaagagaagattgtgtatacatacaatctaatcacagaa
gggacaaaggagaaggacaaatatgataggcaagctaagaaggatcatatgtccaaactg
ctattttcaaaagaaccccatgctgcaggattcaacttgtctcaagaagtgatattcaat
gacaagatattggaagcaatgacatcacatagggagctcaaagacatgtttgtgaagatt
ctccattctcactaa
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