Oryza sativa japonica (Japanese rice) (RefSeq): 4324412
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Entry
4324412 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 15b isoform X1
KO
K13098
RNA-binding protein FUS
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4324412
09122 Translation
03015 mRNA surveillance pathway
4324412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4324412
Spliceosome [BR:
osa03041
]
Complex A
Other components
Complex A specific factors
4324412
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-RanBP
Motif
Other DBs
NCBI-GeneID:
4324412
NCBI-ProteinID:
XP_015620895
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All DBs
Position
1:3322767..3328319
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AA seq
535 aa
AA seq
DB search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NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtcgtacggatccgacgactaccgcggcggctacggcggccgaggtcgcgtc
gggatcctgcgggttgtgtgcgtgcttgcttctggatctgctcctgactggcttgtggtt
ttttttgtaggtggcggcggaggcggccgtgggaggggaggtggcggaggaggaggggga
ggatatggtggtggtggtgtgggaggtggatatggtggtggtggcggaggatatggcggc
ggtggcggagggtacggcggcggtggtagaggtggcggtggaggaggaggctacggcggc
ggtggcggcggcgggagaggtgggggtgggggtggcggtggccgaggtggcggcgggagg
ggtggaggacgtgacggtgactgggtttgcccagacccgagttgtggcaatgtgaacttt
gcaaggaggactgaatgcaacaagtgtggagcaccttctcctgctggaggtggaggtgga
ggtggaggtggagggtataataaatctggtggagggggtggaggctacaatcgtggtggt
ggcgattttagttctggaggtggcggtggctacaacagaggtggaggagattacaactct
ggtggccgtggtggtggcactggagggggaggaagaggaggaggttacaatagaggtggt
ggcgatgatcgtggatttgatgaccaccgtggtggcaggggtggttatgggggaagagac
caagggaacaaccaaaggggagacgaaagtggttatgacgctggtagctatggacaagtt
cctcctcaaggtcctccttcctatggtgggcctggtggtgactatgcagcacctccaagc
tcctatggaggcaataatgcatacaattcagattctgcagtgccacctcctagtagctat
ggtggtggtccaggttcatatccaccaagttatggtgcaccacctccgaacccgccatat
agcggtggtgctccaggtggccaaggtagcctacctccttcatatgatggtgggtatggt
ggtcggcctatgcctgggggtggaggccctggtgcacctccaccctatcatggtggtggt
ggtggtggtggtggcggcggcggtggcggcggatacactggcagtgctgctccagagcca
gctgcaaaggttaagcagtgtgatgcaaactgtgatgagacttgtgataatgcaagaatt
tacatctccaacttacctcctgatgtgactgttgaggaactgcaagaactatttggagga
atcggccaggttggaaggatcaagcagaaacgtggctacaaagaccagtggccctggaac
ataaagatctatactgatgactctggaaagaataaaggagatgcctgccttgcctatgaa
gatccttctgctgctcattcagctggtggattctataacaattatgaaatgagaggctat
aaaattagtgttgcgatggctgagaaatcagctcctagagctcctgcatatggtcatgga
ggtggacgtggtggctatggtggaggtcgcagggataacttcagagatggaggaggccat
gggcctaacaggcatcaaggtggtggttcgcgttcaaggccatactga
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