Oryza sativa japonica (Japanese rice) (RefSeq): 4324846
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Entry
4324846 CDS
T01015
Name
(RefSeq) LOW QUALITY PROTEIN: CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4324846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
osa03036
]
4324846
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
4324846
Chromatin remodeling factors
NuRD complex
4324846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
PHD
SnAC
zf-HC5HC2H
SWI2_SNF2
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
4324846
NCBI-ProteinID:
XP_015639963
LinkDB
All DBs
Position
1:complement(38228567..38236431)
Genome browser
AA seq
1150 aa
AA seq
DB search
MPPARGGRRGRGRGRRGGRGGAASRARGENVVDVEPIKLGDDDAKVDPQTKSPNEEITSA
EVCEVETSEASPLGAPEEDEGKPGSTRNLKRLRKTITIDSAAAEEHGAESDDEASCQELA
PCRRSKRLRCKPTRKRSKPTGKRDLGGKESEDDVFANSSSSSQDDAGKLASRRSKRLRER
LTSDYFDGDVGEDRHPGKSSDDYDENCSAPRRGSKRLRNRLGPRNISYADDDSDTDDNRK
KIVPCRRTSKRLQEKRKAHDVSEESYTEASSCMLSTSSSSDDELLHNSIKPGRRNSGGPS
CSICKIGIACSFLIKCKNSTCSRSFHTFCLDPPLQEIIGTWECSWCKSNAAPAVKVTEVL
TSKKIQRLVGHRRILQEADFQYQFLVKWQSLSHHHDCWVPLEWLHVSDPLRVQSYLNKNC
LPKEVYSEDQRKLEWFEVDHAIACRRKFHHEGLCDVLATFQDNQDFDGYEFLVKWKGLDY
CEATWEPCCTDGVQQAVSMLVRRHKNASKRVNISQTCLDGSKIEEVHCGALYDYQLQGLQ
WLIDNFKTRRSVILADEMGLGKTVQVVCFLYHIIKESLTASPALILAPKSILLQWEKEFC
QWASDLNVIVYQGDRDSRKCIQVHEMYSSDGKPLFDALVTSYEFVQIDKAVLQKFKWSTI
VIDEAHRMKKLDCNLAACLKRYCSEFRLLLTGTPLQNNIMELFSLLHYIDPDEFSDPKAD
GLFSPIESGRDLTMDEKVARIHNILKPRMLRRMKSDVLTDSMPVKKWVEVPCALADSQRE
LYINILERNYSKLNSAIRNGRKLSLNNILMELRKCCNHPYLFPGLEVGQQATEDVFLSLI
ASSGKLQLLHKLLPRLKERGNRVLIFSQMTRMLDILEDFLCSLGYKYARIDGQTSLSARQ
ESIEEYKNIDSETFIFLMSTRAGGMGVDLPGADRVIIYDPDFNPFMDLQAQSRAHRIGQT
RPVVVYQLITKCSVEEKILQKSKQKLAIENMLMNSSKKPSADELQSILLHGAKTIVDRKI
SATSIHYDNEAIENLLKLDPSTGEKCSSDDNGYLGSIVSFAHGVEDEAPSSPKVEDLKVL
KPATPKVDLGRGKRQRKVVNYADEVENEDSDDMYAPEGSSTSEFSSSSSDDETDSALQLQ
IVTVPDIDAD
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccgccggcgagaggcgggaggcgtgggagggggcgaggtaggcgaggtggacgcgga
ggcgccgcctctagggcgcgaggcgagaacgtcgtagacgtcgagccgatcaagctcggt
gatgatgatgcgaaggtagatccacagacgaagtcacctaacgaagaaataacaagcgcg
gaggtttgcgaggtggagacctctgaggctagcccgcttggtgccccggaggaagatgag
gggaagccaggttccactaggaacctgaagcgtcttcggaagacgatcacgatcgattcc
gcagccgctgaggagcatggggcagagagtgacgatgaagcaagttgccaagagttggct
ccatgcagaaggtccaagcgcctaaggtgcaaaccaactaggaagaggtccaaaccaact
gggaagagggatttgggtggcaaggagagtgaagatgatgtatttgcaaatagctcgagc
agttcccaggatgacgccgggaagttagcttctagaagatcaaagcgtctcagggagagg
cttacatctgattattttgatggtgatgtgggtgaagacagacaccctgggaagagctct
gatgattatgatgaaaattgttcggctccccgccgaggatcaaaacgccttcggaacaga
ctgggccccagaaatatttcatatgctgatgatgatagcgacaccgatgataatcgcaag
aagattgtcccatgcaggagaacgtcaaagcgcctacaggagaagcggaaagctcatgat
gtttcagaggagagttacactgaagcttcgtcttgcatgttgtcgacttcttcttcatca
gatgatgaattattgcacaattctataaaacctggcagacgtaattcgggtggacctagt
tgttcgatctgtaagattggaattgcctgctctttcctcatcaaatgcaagaattccact
tgttctcgtagcttccacaccttttgtcttgatcctcctttgcaagagattataggcacc
tgggaatgttcttggtgcaaaagcaatgcagcaccagcagtcaaggtgacagaagtgtta
acatcaaaaaaaatccaaagacttgttggccacagacgaattcttcaggaggcagatttc
cagtatcaattcctcgtgaaatggcaatctctttctcatcatcatgactgctgggttccg
cttgaatggcttcatgtatctgatcctttacgagtacagagctatctaaacaagaactgc
ttgcctaaggaagtttattcagaggatcaaaggaagcttgagtggtttgaagtagatcat
gccattgcatgtcggaggaagttccatcatgaaggtttatgtgatgtcttggctactttc
caggataaccaagatttcgacgggtatgagttccttgtgaaatggaagggccttgattac
tgtgaagctacatgggagccatgttgtaccgatggtgtgcaacaggctgtttctatgctt
gtcaggaggcataaaaatgcttcaaaaagagttaacatcagccaaacatgtctagatgga
tcaaaaatagaagaggtgcactgtggtgctctatatgactatcaacttcaaggtttacaa
tggttaatagataacttcaaaactaggagaagcgttattcttgctgatgaaatgggtctt
gggaaaaccgttcaagttgtttgctttctgtaccacattattaaggaaagtttgactgca
tccccagcattgatccttgctccaaagagcatcctcctgcaatgggaaaaggaattttgc
cagtgggctagtgatcttaatgttattgtttatcaaggagacagagactctcgaaagtgt
atccaagtccatgaaatgtactcttctgatgggaaacctttatttgatgctctagtgacg
agttatgagtttgtccaaattgacaaggcagttctacagaaattcaagtggtctacaatt
gtcattgacgaggctcacagaatgaagaagcttgactgcaaccttgcagcttgcctaaaa
cgatactgctctgaatttcggttgctccttacgggaacaccgttacaaaataacatcatg
gaactgttttctttgcttcattatattgatccggatgagttctctgatccaaaggctgat
ggattgttctcaccaattgaatctggaagggatttgacaatggatgaaaaagttgctagg
attcacaatattttaaagcccaggatgttgcggagaatgaaatctgatgttctaacagat
tctatgccagtaaagaagtgggttgaagttccatgtgcacttgcagattcccagagagaa
ctttacattaatattttagagaggaattactcaaagcttaacagtgccattcggaatggc
agaaaactttctctgaacaacatacttatggaactcagaaaatgctgcaatcatccatat
ctatttccaggacttgaagttggacagcaagcaactgaagatgtgtttttatcacttatt
gcttcatcaggcaaacttcaacttcttcataagttgctcccaagattgaaagaaagggga
aatcgtgtactgattttctcgcagatgaccaggatgcttgacattcttgaggattttctt
tgttccctgggatacaaatatgcacgcatcgatgggcagacatcactctctgctaggcag
gagagcatagaagagtacaaaaacattgatagtgaaacatttattttcttgatgtcaact
cgtgctggtggcatgggagttgacctgcctggtgcagatagggtaattatatacgatcct
gacttcaatccatttatggacttgcaagcacaatctcgggctcatcggatcgggcagaca
agaccagtggttgtttaccaactcattacaaagtgttctgtcgaggaaaagatactgcag
aagtcaaagcagaagttggccatcgaaaatatgttgatgaactcttccaagaagccaagt
gctgatgagttgcagtctatattactccatggagcaaagacaattgtggacaggaagatc
agtgcaacatccatccattatgacaatgaagccattgagaatctcctcaagttagaccct
tccactggtgagaaatgctcgtcggatgataacggttatcttggcagcattgtgagcttt
gctcatggcgtcgaggatgaagcaccttcttccccaaaggttgaggatctgaaagttctc
aagcctgctactcccaaggttgatctcggccgtgggaagaggcaaaggaaagtcgtgaac
tacgctgacgaggttgagaatgaagacagtgatgatatgtatgccccggaaggttcgtcg
acttccgaattcagcagttcgtcctccgatgatgaaactgacagcgctctgcagctgcaa
atagttacagtaccggacattgatgcagattag
DBGET
integrated database retrieval system
