Oryza sativa japonica (Japanese rice) (RefSeq): 4331440
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Entry
4331440 CDS
T01015
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
osa03036
]
4331440
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
4331440
microRNA pathway
RISC loading complex
4331440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
DND1_DSRM
PAZ
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Kinesin
Motif
Other DBs
NCBI-GeneID:
4331440
NCBI-ProteinID:
XP_015631183
LinkDB
All DBs
Position
3:complement(1195675..1205365)
Genome browser
AA seq
1925 aa
AA seq
DB search
MAGGGGVGGGAGEHAAAAYWYDACEDGASLLCGIDFAASADFDPGLIPAMDTGADDGFVA
EIDRILESINAESSPAPPPPPPPPLPEPVPVAPPELPIQEKQLQVASAPVANNAVAVVGV
VQRSKGVVARKEPRRESHGCAANGGGGGEWRDGKRPRLASGGVGGPRQEWRRRPMLPPPP
SRGWDDRRGRRDFDRVRKHEHHRREARGFWERDRGGKMVFRSGTWEQESDREAKRARTQD
GGSMEKKAEADRMGAAQREKPVAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLL
IKSVCDKMLKENKKMLAVFLVPKVPLVYQQAEVIRDRTGYRVGHYCGEMGQDFWDARKWQ
REFESKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPK
EKRPAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVV
VQYDKAATLWSLHEQIKQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERT
ESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKV
VDLLHCQLTEGAAMKSETSDVEMQNTEKHNTNDLEEGELPDSHAVSVGEHVDEVIGAAVA
DGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGH
NNNQEMRACQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR
GRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTS
PGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKL
QLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEGEKTEQND
EGEPLPGTARHREFYPEGVADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPF
VTQLSNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVR
LMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDPLREIDWTLVNNIVNTDAWNNPLQR
ARPDVYLGTNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPA
RDRGHFSDYQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKE
GYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSEN
LDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIIDYPVPATKIL
EALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQ
YALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYA
DNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPE
EIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFV
GDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALET
QIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQP
LLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQK
KMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRC
VNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRDFPDKP
DGKQP
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggaggagttggaggaggcgctggcgagcacgcggcggcggcgtactgg
tacgacgcgtgcgaggacggcgcgtcgctgctgtgcggcatcgacttcgccgcgtccgcg
gacttcgaccccggcctcatacccgcgatggacaccggcgccgacgacggcttcgtcgcc
gagatcgacaggatactcgagagcatcaacgcggagagctcccctgcgcccccacccccg
ccgccgccgccgctacctgagcccgtgcctgtggctccgccggagctaccgattcaggaa
aagcaattacaggtggcctctgcgcccgtggccaacaatgccgtggcggtggtgggcgtt
gtgcagagaagtaaaggcgtggtggcgaggaaggagccgaggagggagtcgcatggctgt
gctgcaaatggcggcggcggtggggagtggagggacgggaagcgcccgcgcctcgcctcc
ggtggtgtcgggggaccgcgtcaggagtggcggcggaggccgatgctgccaccaccgccc
tcgcgtgggtgggatgacaggcgtggaaggcgcgatttcgacagggtccgcaagcacgag
caccatcggcgcgaggcccggggtttctgggagcgtgaccgcggcggcaagatggtgttc
cgctcaggcacctgggagcaggagtctgaccgcgaggcaaagcgtgccaggacgcaagat
ggaggctccatggagaagaaggcagaggcagataggatgggggctgcgcagcgggagaag
cctgtcgcggaggagcgtgcaaggcaataccagctagaggtgcttgagcaagctaagagc
aggaacacaatagccttcctggagactggcgcagggaagactctcatcgccgtgcttctc
atcaaaagtgtgtgcgataaaatgctcaaggagaacaagaagatgcttgctgtcttcttg
gttcccaaggtgcctcttgtgtatcagcaagctgaggtgattcgtgacagaaccggctat
cgtgttgggcattattgtggagagatgggacaggatttctgggatgctagaaagtggcag
cgcgaattcgagtcgaaacaggtactagttatgacagcccaaattttgttaaacatcctc
aggcacagtattattaaaatggatgcgatacatcttttgattttagatgagtgccatcat
gcagtgaaaaaacatccatattctctagtgatgtcagaattttatcacacgactccgaag
gagaagaggccagcagttttcggtatgacggcttctcctgtcaatctaaaaggagtgacg
agtcaagaggactgtgccatcaagataagaaatcttgagagcaaactagattcagtagtt
tgtaccatcaaagatcgtaaagagcttgagaagcatgtccccatgcctttggaagttgtt
gtccaatatgacaaagcagccactctttggtccttgcatgagcaaatcaaacaaatggaa
agcacggttgaagaagctgcactctctagctctaagagaactaaatggcagttcatgggg
gctagggatgctgggtctagagatgagctgcgtcttgtctatggtgtttcagagcgtaca
gagagtgatggtgcggctaatttaatccagaagttgagagctataaattatgctttaggt
gaacttggacaatggtgtgcatataaggttgcacagtcctttttgactgcattacaaaat
gatgaaagggcaaactatcaggttgatgtcaagtttcaagagtcttatttaaaaaaggtt
gttgatctgttacactgccagttgactgaaggggctgcaatgaaaagtgagaccagtgat
gttgaaatgcaaaatactgaaaaacacaacacaaatgaccttgaggagggggagctgcct
gacagtcatgctgtttctgtaggtgagcatgtagatgaagttatcggtgctgccgtagca
gatggtaaagttactcctagggtgcaggctttgatcaaaatacttctcaaatatcagcat
actgaggattttcgtgccataatctttgtggagagagttgtgacagcattagttcttcct
aaggtattggcagaacttccatctctaagttttattcgatgtgcaagcttgataggccat
aacaataatcaagagatgcgcgcgtgccagatgcaggatacaatttcaaaatttcgtgat
ggccgtgttacacttttagtcgcaacaagcgttgcagaggaagggcttgatattcgacag
tgcaatgttgtcattcgatttgaccttgcaaagaccgtcttagcctacatacagtcacgt
ggtcgtgcaagaaagcctggatctgattatatattaatgcttgaaaggggcaatatatca
catgaaacttttttgaggaatgctcggaatagtgaggagacgttgagaaaggaagctatg
gaaagaaccgatcttagtcatttggatggtacttctgtgttgagtcctgttgatacatca
cctggttcaatgtatcaggttgaatcaacaggtgctgttgtcagcttgaactcagcagtt
ggactcatacatttttactgttcacagttgccaagtgacagatactcaattcttcatccg
gaattcattatgcaaaagtatgagaagccaggtggttcagtggaatattcttgcaagctt
cagctcccttgtaatgccccgttcgaaaaacttgagggtcctatatgcagttcaatacga
ctggcacagcaggctgtttgtttggctgcttgtaagaagctgcatgagatgggtgccttc
acagatacgctcttacctgacagaggaagcggggaaggggaaaaaactgagcagaatgat
gaaggtgaaccacttcctggaacagctcgccatagagagttttatcctgaaggtgttgct
gatattctacggggagaatggattttatctggcagagatggctaccaaaactctcaattt
attaagttatatatgtattctgtgaactgtgtaaacgttgggacttctaaggaccctttc
gttacacaactttcaaattttgcaattatttttggcaatgagctggatgcagaggtttta
tcgacgacgatggatctctttgttgcaaggacaatgataacaaaggcatctctcgtattc
cgtggacgaattgaaattacagaaagtcagctggtgttgctgaagagctttcatgttagg
ctcatgagcatagtacttgatgttgatgttgatccctcaactacaccttgggatcccgca
aaagcatacctctttgtccctgtaggagctgagaagtgtacagatcctttaagagagatt
gattggactttggttaacaacattgttaacactgatgcctggaacaatccacttcagagg
gcacgcccagatgtctatctaggcaccaatgaacgaacacttggtggggataggagggaa
tacgggtttgggaaattgcgccatgggactgcttttggacaaaaggcccatcctacttat
ggtattaggggagctattgctgaatttgacattgtgaaagcatctggattagttcctgct
cgtgatagaggacattttagtgattatcagaaccaaggcaagttgttcatggcagattca
tgttggaatgctaaagatcttgctggaatggttgtcactgctgcccactcagggaagagg
ttttatgtggactgcatttgctataacatgaatgcagaaaattcattccctaggaaagaa
ggctacctggggccattggagtatagttcatatgctgattactacaagcagaagtacggt
gtggagttaatctataggaaacagcctcttatacgggcccgtggtgtttcatattgcaag
aatcttctttctcctagatttgagcattctgacgctagagaaggtgacttctctgagaac
cttgacaaaacatactacgtgtatttgccacctgagttgtgccttgtgcacccacttcct
ggatcactagttcgtggagctcagaggttgccctcaataatgagaagggtggagagcatg
cttcttgcagttcaattgaaggacataattgattaccctgttcctgcaactaagatacta
gaagccttgactgctgcatcatgccaggagacattatgctatgaaagagcagagctgctg
ggtgatgcatacctgaaatgggtcgtgagtagattcctcttcctaaaatatcctcaaaag
catgagggacagcttacaaggatgcggcagcagatggttagtaacatggtcctgtaccaa
tatgctctgaataaaaccctccaatcatatattcaagcagaccggtttgctccatcaaga
tgggcagctccaggagtgctacctgtattcgatgaagagtctagagagtatgaaccttcc
atctttgacgaggaatcaactggttgcgagttacagaaggaatcctatgatgactatgca
gataacatgcaagaagatggtgaaattgaaggagactctagctgctatcgggttctgtcg
agcaaaactttagcggatgttgttgaggcacttattggggtgtattatgtagcaggaggg
aaaatcgctgcaaaccacctgatgaaatggattggaattcatgcagagttggatcctgaa
gagatcccacctccaaagccatatgacattcctgagagcataatgagaagcatcaacttt
gacacgttgaaaggtgtcttgggtatcgaattccagaataaaggtttacttgttgaggcc
ataacacatgcatcgagaccatcttctggtgtttcctgttaccagcgtttggaatttgtt
ggtgatgctgtgttggatcatctcataaccaggcatttgttttttacatatactgaccta
cctcctggccgcttgactgatttgagagctgcagctgttaataatgagaattttgcaagg
gttgcagttaagcataagctgcatgtacatcttcgccatggatcatctgcattagaaaca
cagattcgagagtttgtgaaagatgtccaagaggagcttttgaaaccaggtttcaattct
tttgggcttggggattgtaaggctcctaaagttcttggtgacattgttgagtcgattgct
ggcgcgatattcctggatagtggatatgatacctcagttgtctggaaggtttttcagcca
ctccttcatccaatggtgacgccagagacccttccgatgcatccagttagggagctccaa
gaacgctgccaacagcaggctgaaggcctggaatacaaagcatcccgagcaggcaacata
gctactgttgaagtatttgttgatggtgttcagatcggtgtagctcagaaccctcagaag
aagatggcacagaagttggcagcgaggaatgcacttgtggtcctgaaggagaaggaaacc
gcaacaaagaaagaagatgaaagggatggcgagaagaaaaatggtgctcagatgttcacc
aggcagaccctgaacgacatctgcttgagaaggcagtggccaatgcctcagtacaggtgc
gtaaacgagggtggccctgcccatgctaaaagattcgtctattcggtgagggtgaacact
tctgatcgtggatggacggatgaatgcattggagagccaatgcctagtgtgaagaaggct
aaagactctgctgcagttcttctcctcgagcttctgaatagagatttccctgacaagcct
gacggtaagcagccgtag
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