Oryza sativa japonica (Japanese rice) (RefSeq): 4335134
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Entry
4335134 CDS
T01015
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
4335134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4335134
Membrane trafficking [BR:
osa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
4335134
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
PROPPIN
zf-RING_2
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
4335134
NCBI-ProteinID:
XP_015636650
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Position
4:6511568..6518980
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AA seq
959 aa
AA seq
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MSTAARRGHPPPHENGVGGHADDEPDEDGEEEEEEGEGEVEDDEEEEPRLKYQRLGGSVP
AIVSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAAHTATINDISFDADGEYIG
SCSDDGTVVISSLFTDEKLKFEYHRPMKAIALDPNYYNNYRRFATGGLAGQVLVLTKKSW
GGGYHKKVLRDGEGPIHSMKWRTDLLAWANDAGVKVHDMKTDKGIAFIERPKGIPRPEFL
LPQLVWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKYVDIVGSFQTGYHI
SGIAPFGDLLVVLAYIPEEEDRENSFSNSVPSRQGTAQRPEIHLVSWKNDELTTDALPIH
GYEHYKAKDYALAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDAEDHISWLLQ
HGWHEKALAAVEAGQGRTELLDEVGSRYLDHLIIERKYAEAARLCPKLLRGSPSAWERWV
FHFAHLRQLAVLVPYIPTENPQLSDTAYEVALVALTTNPSFHELLLTTVKKWPPTLYSAS
PVISAIEPQLNSSSMTDSLKEALAELYVINSQYDKALSLYAELLKPEVFEFIEKHNLHDA
IHDKVVNLMILDSKRTVNLLIQHRDTIPPNEVVGQLLHASKSCDKRHLLHLYLHALFETD
MNAGKDYHDMQVELYAEYEPRMLIPFLRTSQHYRLDKAYEIFAQKELVREQVFVLGRMGN
AKEALSTIINKLEDIQEAVEFVMEQHDDELWEELIRQCLQKPEMVGMLLEHTVGNLDPLY
IVSLVPDGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKVNIQEKDILKADCVNLLVKY
YHEARRGVYMASMDEEVTGTRVAEGSSRANERSSSLRALEIKSRTRCGARCCLCFDPLSI
QDISVIVFYCCHAYHTSCLEGGLDLMKSNSSTQDSDEDDEGTPSGESRMRCVLCTTAAA
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggcggcgcggcgcggccacccgccgccgcacgagaacggcgtgggcgggcac
gccgacgacgagccagacgaggacggcgaggaggaggaggaggagggggagggggaggtg
gaggatgatgaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtcccc
gcgatcgtctccaccgacgccgccgcggccatcgccgtcgccgaccgcatggtcgcgctc
ggcacgcacaacggcaccctccacatcctcgacttccagggtaatcaggtaaaggaaatt
gctgctcacacagcaactatcaacgacatcagttttgatgcagacggtgaatatatagga
agctgctctgatgatgggactgtagtaataagcagcctcttcactgatgaaaaactgaag
tttgagtaccatcgacccatgaaagcaattgccttagaccctaattattacaacaactat
agaaggttcgctacagggggtttagcaggtcaagtacttgtgctgacaaaaaagtcgtgg
ggaggtggctaccataaaaaggttctgcgtgatggcgaaggaccaatccattctatgaaa
tggaggacagacctccttgcctgggctaacgatgcaggggtaaaagtgcatgatatgaag
acagacaaaggaatcgcgtttatagagaggccaaaaggaattcctcggccagagttttta
cttcctcagttggtctggcaggatgataccatcttagttattggatggggaacaagtgtc
aagattgcagcaattcgaacagattcatctcaaggactcaatggcatacagaggagtatc
actgcaagtaatgagaagtacgtggatattgtgggttcgttccaaacaggctatcacata
tccgggattgctccatttggtgatcttttagttgtgcttgcatatattccagaggaggaa
gacagagaaaacagttttagcaattctgttccttcacgtcagggaactgcccagcgtcca
gaaatacatcttgtatcatggaaaaatgatgaacttaccacagatgctcttcctattcat
ggttatgagcattataaggcaaaggattatgctcttgctcatgctcctttctcaggaagc
agcaatgcaggtggacagtgggctgctggtgatgaacctttatattacattgtatctcct
aaagatatagtggtcgcaaagccaagagatgctgaagaccatatttcttggcttcttcaa
catggttggcatgaaaaggcattggctgcagttgaagcaggacaaggacgaaccgagctt
cttgatgaggtgggttcgagataccttgatcatttgataattgaaagaaaatatgctgaa
gctgcacgcctctgtccaaaattgttgcgaggatctccttcagcatgggagaggtgggtc
tttcactttgcccatcttcgccaacttgctgtattagttccttacatacctacagagaat
cctcagctgagtgatacagcttacgaggttgctcttgtagctttaactaccaatccttct
tttcatgaacttctcttgacaactgtaaaaaaatggccacctacattatactccgcttca
cctgtcatatctgcaattgagccacagctaaattcctcttcaatgactgattcattaaaa
gaggctttagctgaattgtatgtcatcaacagtcaatatgacaaggccctttctctgtat
gctgaactcttgaagccagaagtattcgaatttattgagaagcacaacttgcatgatgcc
attcatgacaaggttgtcaatcttatgatattggatagtaaaagaactgtaaacctattg
atccagcatcgtgatacgatccccccgaatgaagttgtaggacagttgttgcatgctagt
aaaagttgtgacaaaagacatttgttgcatctgtatttacatgctctgtttgagacagac
atgaatgctggaaaagactatcatgacatgcaggtggagctttatgcagagtatgagcca
aggatgctaatacccttcctccgtaccagtcagcattacaggcttgacaaggcatatgaa
atctttgcacaaaaagagcttgtacgggagcaagtttttgtgcttggtcgtatgggaaat
gcaaaggaagctctctctacaattataaacaaattggaagatattcaggaggccgttgaa
tttgtgatggagcaacacgatgatgagttatgggaggaattgataagacagtgcctccaa
aaacctgagatggttggaatgctgttggaacatactgttggcaatcttgatcctttgtac
attgttagtttggttcctgatgggctagaaataccaaggttgcgggatcgccttgtgaaa
attgtgacagactatcgaacagaaacttcattaagacatgggtgcaatgatatacttaag
gttaatattcaagaaaaagatatacttaaggctgattgcgtaaaccttttggtaaaatat
tatcacgaggctcggcgtggagtctacatggctagtatggacgaggaggtgacaggaact
agggttgctgaaggatcttcacgagcaaacgagagatcatcaagtttacgagctttagag
atcaaatccagaacaaggtgtggtgctcggtgttgcttgtgctttgatcctttgtcgatt
caggacatctctgtcatcgtgttctactgctgccacgcatatcacacgtcttgcctcgaa
ggcgggttggacttgatgaaatcgaacagtagtactcaggacagcgacgaggatgatgaa
ggtaccccatcaggcgagtctcgaatgcgctgtgtattgtgtactacagctgctgcataa
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