KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4341387
Entry
4341387           CDS       T01015                                 
Name
(RefSeq) probable histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03082  ATP-dependent chromatin remodeling
osa03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4341387
   03083 Polycomb repressive complex
    4341387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:osa03036]
    4341387
Enzymes [BR:osa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     4341387
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     4341387
   HDAC complexes
    Sin3A-HDAC complex
     4341387
    BRAF-HDAC complex
     4341387
    REST complex
     4341387
    SHIP complex
     4341387
    MiDAC complex
     4341387
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     4341387
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    4341387
  Chromatin remodeling factors
   NuRD complex
    4341387
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 4341387
NCBI-ProteinID: XP_015643781
UniProt: Q7Y0Y8
LinkDB
Position
6:complement(22794346..22800216)
AA seq 518 aa
MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPS
NMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADS
DVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQDGNRVAAENTKGTEPAADGVGSSK
QTVPTDASAMAIDEPGSLKVEPDNSNKLQDQPSVHQKT
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggcc
aagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcagggg
cacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctc
ctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccag
atccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctac
agcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcg
ggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccag
cgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctac
acgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggacc
ggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttg
gacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtg
atggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggt
gataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatg
aggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgtt
gcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatg
cctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagt
aacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgat
aatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggct
gagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattct
gatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcag
aatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagg
gtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaa
caaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtc
gagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataa

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