Oryza sativa japonica (Japanese rice) (RefSeq): 4345332
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Entry
4345332 CDS
T01015
Name
(RefSeq) histone deacetylase 6
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03082
ATP-dependent chromatin remodeling
osa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4345332
03083 Polycomb repressive complex
4345332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
osa03036
]
4345332
Enzymes [BR:
osa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
4345332
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
4345332
HDAC complexes
Sin3A-HDAC complex
4345332
BRAF-HDAC complex
4345332
REST complex
4345332
SHIP complex
4345332
MiDAC complex
4345332
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
4345332
Heterochromatin formation proteins
Other heterochromatin formation proteins
4345332
Chromatin remodeling factors
NuRD complex
4345332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
4345332
NCBI-ProteinID:
XP_015648088
UniProt:
Q6ZB59
Q0J6A5
LinkDB
All DBs
Position
8:15554136..15559152
Genome browser
AA seq
458 aa
AA seq
DB search
MAASGEGASLASAAGGEDGRRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPALLDARAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFFPGTGHITDVGAGEGKHYALNVP
LSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRY
LRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYNLHIQP
RSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDRPSDPEAPEQEEEDMDKRPPQRSR
LWSGGAYESDTEDPDNMKTETNDLSASSVMKDESNDDS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccggcgagggggcgtcgctggcgtcggcggcgggaggggaggacgggcgg
cggcggcgggtgagctacttctacgagccgtcgatcggggactactactacgggcagggg
cacccgatgaagccccatcgcatccgcatggcgcactcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctccgacgccgacatccgccgcttc
cactccgacgactacgtcgccttcctcgcctccgccaccgggaaccccgccctgctcgac
gcccgcgccgtcaagcgcttcaacgtcggcgaggactgcccggtcttcgacggcctcttc
cccttctgccaggcctccgcggggggcagcatcggcgccgccgtcaagctcaaccgcggc
gacgccgacatcaccgtcaactgggcggggggcctccaccacgccaagaagggcgaggcc
tccggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccaccatggagatggcgtggaggaagctttc
ttcactacgaatcgagtcatgacttgttcctttcacaagtatggggactttttccctggt
actgggcatatcactgatgttggagcaggcgaaggaaaacattatgctttaaatgtgccc
ctgagtgatggcattgatgatgatacctttcgtgatctgttccagtgcatcatcaaaaag
gtaatggaggtttatcagccagatgtagttgttctccagtgtggagccgactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaaaggtcatgcagactgcctccgttac
cttaggtcattcaatattcctatgatggttttgggaggtgggggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgctgttggagttgaacctgataacaag
ttaccttataatgactactatgagtactttggtcctgattataatctccatattcaaccc
agaagtgtggagaacctgaattcgactaaagacctggagaacataaagagcatgatattg
gatcatctctcaaaaattgagcatgttccgagcactcagttccatgacagaccatcagat
cctgaagctccagagcaggaagaggaggacatggacaagagaccacctcagcgcagtagg
ttatggagtggaggagcttatgaatctgatacagaggatcctgacaacatgaaaactgag
accaatgacttatctgccagctctgtcatgaaggatgaatcgaatgatgattcctag
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integrated database retrieval system