Octopus sinensis (East Asian common octopus): 115220775
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Entry
115220775 CDS
T07665
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
osn
Octopus sinensis (East Asian common octopus)
Pathway
osn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115220775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osn03041
]
115220775
Enzymes [BR:
osn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115220775
Spliceosome [BR:
osn03041
]
Complex C
Other components
Step II factors
115220775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
Med28
Sigma54_activ_2
T2SSE
AAA_14
ResIII
SRP54
AAA_30
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
115220775
NCBI-ProteinID:
XP_029646781
UniProt:
A0A6P7TAP4
LinkDB
All DBs
Position
LG17:15327456..15437375
Genome browser
AA seq
1252 aa
AA seq
DB search
MANLSFIDDESIHRLEGSTEKVGGLVVMKKSPSSIDSSFKFQKPGVSLLGLDRLAAQKRK
VHDHGDTEESKEKGSKGNIEEIRSKSHKDRHYRAPRDETPSHPGGVNTVAKEKIKSRHHR
ERGVFASSKDSKKHRSETSENEHRSWQRKSDRDKSYKHRDRDERDRSKHRDHHKSSHRRR
DDHSERSSRSGSESSSRENRSVRSSSRSWEFSERESRRREREWEETPRREQSDEPATPDL
RPTDTPLTKAAWDDDDGVPATKSSWDLASVGGSPYTDDRSERSDSWVDRDRSRASESRSF
QKISETPLPTPTYKHNKWMNDRDRRHSSRREKLDIKFETEEEKNDWEDEQKRLDREWYGM
DEGYDDEHNPFSGTSNEYTKKKEEEMEQRKKKRMSARQRQINKDIEMWETNRMLRSGVVT
KIGYDDDFEEDNEARVHLLVHNTVPPFLDGRIVFTKQPEPVIPVKDPTSDMAVVSRKGCA
VVRSYREQKERKKAQVKHWELAGTKIGEIMGVKKEDETDKNGDVDYKTGHKFAEVMSDQT
EAVSEFAKRRTILQQRQYLPIFAVRNELLNIVRDNSVVIIVGETGSGKTTQLTQYLHEDG
YTNYGMVGCTQPRRVAAMSVAKRVSEEMSVELGEQVGYAIRFEDCTSENTLIKYMTDGIL
LRESLRESDLDNYSAIIMDEAHERSLSTDVLFGLLREVVSRRQDLKLIVTSATMDASKFS
TFFGNVPIFKIPGRTFPVDVLFSKNPVEDYVDSSVKQAMQIHLQQAEGDILVFMPGQEDI
EVTCELISERLSQLDDPPPLAILPIYSQLPSDLQAKIFQKAPDGIRKCVVATNIAETSLT
VDGIMFVIDSGYCKLKVFNPKIGMDALQVFPISQANANQRSGRAGRTGPGHCYRLYTERQ
YKDEMLVTSVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILGAL
DNTGMLTPLGRQMVEFPLDPALSKMLIISMEMECSAEILVIVSMLSVPAIFYRPKGREED
SDSSREKFQVPESDHLTYLNVYQQWKRNGYSANWCNEHFIHIKAMRKVREVRQQLKEIMD
QQKMDLISCGNDWDVARKSICSSYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGYN
PDYIVYHELVMTSKEYMQCVTAVDGQWLAEMGPMFYTIKDSTKSRQDRKKQVKEEMTAME
DEMKRADELIKARKEQQERSALGSKRSNIATPGRVDPATPWSNRKSSGKFGL
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggctaatcttagcttcatagacgacgaatctattcatcgtttggaaggcagcactgaa
aaagttgggggcttggttgtgatgaagaaaagcccttcttccattgacagttcgttcaag
tttcaaaaaccaggtgtatccctcttgggactcgaccgactggctgcccaaaagcgtaaa
gtccacgaccacggagatacagaagaatcaaaagagaagggttccaaaggaaatattgaa
gaaataagatcgaaatctcataaagacagacattatcgtgctccaagagatgagacccca
tcacatcccgggggtgtcaatactgttgcaaaggaaaagatcaaaagccgtcatcatcga
gagcgtggggtttttgcatcatcaaaagacagcaagaagcataggagtgaaacgtctgag
aacgagcatcgaagttggcagcgtaaaagcgatcgagataaaagctacaagcaccgagat
agagatgaacgagatcgaagcaagcatcgggaccatcataaaagttctcataggaggaga
gatgaccacagtgagagaagtagccgaagtgggtcagaatcttcttcaagagaaaataga
agtgtgcgaagcagttctcgtagctgggaattctctgaacgggagagtcgacgacgggaa
cgagaatgggaggaaacaccacgtcgggaacagtcagatgaacctgccactccggacctc
cgaccaactgacacaccattaacgaaagctgcctgggatgatgatgatggtgttcctgcc
acaaagtctagttgggatctggcatctgttggtgggtcaccttacacggatgataggagt
gaacgtagtgattcatgggtagacagggacagaagcagggcaagtgagtcaaggtctttt
cagaaaatttccgaaactccccttcctacacccacctataaacacaacaagtggatgaat
gatagagacagaaggcactcatcacgcagagagaaattagacatcaaatttgaaactgaa
gaagagaaaaatgattgggaagatgaacagaaacgccttgatcgagaatggtatggcatg
gatgagggttatgatgacgagcacaacccattctctggaacttccaatgaatacacaaaa
aagaaagaagaagaaatggaacagaggaagaagaaaagaatgtcagctcgtcagagacaa
atcaacaaggatattgaaatgtgggagacaaaccggatgctgaggagtggagtggtcacc
aaaatcggttacgacgatgactttgaggaagataatgaggcacgtgttcatttactagtg
cacaacacagtgccacctttccttgatggtagaattgtattcaccaaacaaccagagcct
gtaatccctgtgaaggaccccacttcagacatggctgtagtgtcccgcaaaggctgtgca
gttgtaagatcatacagagaacagaaggagcggaagaaggcccaagtgaagcactgggaa
ttggctggaaccaaaattggtgaaattatgggagtgaaaaaggaagatgaaactgacaaa
aatggagatgtagattataaaactggccacaagtttgcagaagtgatgtctgaccaaaca
gaagctgttagcgaatttgctaaacgtcgtaccatcttacaacagagacagtacttgcct
atttttgctgtgcgaaatgagctgttgaacatagtccgagacaacagtgtggtgattatt
gttggagagactggctcagggaaaactactcagttgactcagtatcttcatgaagatggc
tataccaactatggcatggtcggctgtacccagccgcgtcgagtcgctgccatgtctgtt
gccaaacgtgtttctgaagaaatgtctgttgaacttggtgaacaagttgggtatgctatt
cgatttgaagattgtacttctgagaatactctcataaaatatatgacagatggtattctg
ttgcgagagtctttgagagaatctgacttggataattacagtgccatcataatggatgaa
gctcatgaaaggtcgctcagtacagacgttctctttggtctgctacgagaagtagtttct
cgaaggcaagatttgaagctaattgttacatcagccaccatggatgcatctaaattctca
actttctttggaaatgttcccatttttaaaattcctggccgaacattccctgttgatgtg
ttgttcagtaaaaaccctgttgaagactatgttgattcttctgtaaaacaggccatgcag
atccatctccaacaagcagaaggtgatattttggtatttatgcctggtcaggaagatatt
gaagtgacgtgcgaattgatatcagaacgtctttcacagcttgatgatcctccgcccttg
gccattcttcccatatattcacaacttcccagtgatttacaagcgaagattttccagaaa
gctccagatggcatccggaaatgtgtggttgccacaaatattgcagaaacttccctgaca
gttgatggtattatgtttgtcattgattccggttactgcaaactgaaagtgtttaatccc
aaaatcggtatggatgcccttcaggtattccccatcagtcaggccaatgctaatcaacga
tctggacgtgctggtcgaactggaccaggacactgttaccgcctgtatactgaaaggcag
tataaagatgaaatgctggtcacttcagttccagagatccaaagaacaaacttggccaat
gttgtattgcttttgaaatcccttggggtccaagatctcttgcagtttcattttatggac
ccacctccacaggacaatatactgaattctatgtatcagctgtggattcttggtgctcta
gacaacacaggcatgcttacaccgcttggccgtcaaatggtagaatttcctttagatcct
gccttatcaaaaatgcttataatttcaatggagatggaatgtagtgctgaaattcttgta
attgtttcaatgctatctgtgcccgccatattctacagaccaaaaggacgagaagaagat
tccgattcttcaagagagaagttccaagtgcctgagagtgaccatttaacttatctgaat
gtctatcagcaatggaaaagaaatggctactcagcgaactggtgcaatgaacatttcata
cacataaaagccatgagaaaggtgcgagaagtacggcaacagctgaaagagattatggac
caacagaagatggatttgatctcctgtggaaacgactgggatgttgcacggaaaagcatt
tgttcgtcctatttccaccaggctgcaagactcaagggcatcggagaatatgttaactgc
cgaacggggatgccatgtcacttacaccctaccagcgccctctttggcatgggctacaat
cctgactatattgtctaccatgaattggttatgacatccaaggaatacatgcaatgtgta
actgctgtggatggtcagtggctagcagagatgggaccaatgttttatacaattaaggac
tcgacaaagtcaagacaggatcgtaagaaacaggtgaaggaagagatgacagcaatggaa
gatgagatgaaaagagctgatgaactgatcaaagccaggaaggagcaacaagaacggtct
gcccttggttctaaaaggtcaaatattgctaccccagggagagtagatccagcaactcct
tggtcaaataggaaatcatccgggaaatttggcctgtga
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