Ostreococcus tauri: OT_ostta07g00370
Help
Entry
OT_ostta07g00370 CDS
T01358
Name
(RefSeq) Translation elongation/initiation factor/Ribosomal, beta-barrel
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta07g00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta07g00370
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
OT_ostta07g00370
Complex C
U5 SnRNP specific factors
OT_ostta07g00370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
SRPRB
Motif
Other DBs
NCBI-GeneID:
9836811
NCBI-ProteinID:
XP_003080142
UniProt:
Q015X0
LinkDB
All DBs
Position
7:complement(63013..66063)
Genome browser
AA seq
1016 aa
AA seq
DB search
MSDLYDEFGNYVGPDVRSDDDASDDADDAWMDRAEAAVLDRDGRSDDVDDDARDDDDDAH
DDDDANDDARAVVLAEDKKYYPSAEEVYGADAETLVETEDAQGLDEPLVKPVKRRNIEAT
AERESGGSGGARARAQGAEVRMKCGEAFLNGLARESRRLGRNVCVSGHLHHGKTTLFDML
LEASHDVDYEWLVNEERLRYADTRLDEQARGISLKSTPMTLPLETSRGKTMLMNLIDTPG
HVNFSDEVTASMRVADGLLLVVDACEGVMTSTTRHIKQAARDGLTICVFISKLDRLIVEL
KLPPADAYHKLRHTIEEINTAIEACYAPDENGELPTVSPLKGNVCFGSALYGFSFTLESF
ARLYADISGVTVDHKEFGKRMWGDVYYHSDSRTFKKKAPPGGGERTFVQFVLQPLYKIFS
QVVGEEVESLTDALKEFGVKLKPKEKRANTKPLLKLTCQKIFGGTSGLVDMLVAHVPTPE
EGASMKVERTYSGPIRGGGKLVDAMLACDPEAPAVVMISKLIPKSDCSAFDALGRVMCGT
LKKGDHVRVLGENFSPDDEEDAVVKAVTNMWIYEARYRIPIKEARAGAWVLIEGVDQSIT
TTATLVPDVMPKGYDDDLYIFKPLEFDNKSVMKIAAEPLNPSDLPKMVEGLRKITKSYPA
CVTKVEESGEHTIMGTGELYMDSIMKDLREMYSEIEVKVSDPVVCFNETVVETSSLKCYA
ETPNKKNKLTMIAEPLDKGLASDIETGKIRLDAPKKTVSDFFKNNYDWDALAAKSVWAFG
PDTTGPNVLLDDTLPTEVDKNLLGAIRDSIVQGFQWGAREGPLCDEPIRDVKFKILDALV
ADTPLQRGGGQIIPTARRCTYSAFLMATPRLMEPIHEVEIQCPADCMSAIYTVLSKRRGH
VVSDAPKPGTPVYTVKALIPAIETFGFETDLRYHTQGQAFGQSYFDHWAVVPGDPLDKTI
VLRPLEPAPVPHLAREFMVKTRRRKGMSEDVTVSKFFDDDLLIELAQADVELAGMF
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctctacgacgagttcgggaactacgtcggtcccgacgtgcgctcggacgac
gacgcgagcgacgacgcggacgacgcgtggatggatcgcgccgaggcggcggtgctcgac
cgcgacgggcgatccgacgacgtggacgacgacgcgcgggacgacgacgacgacgcgcac
gacgatgacgacgcgaatgacgatgcgcgcgcggtggtcctggcggaggataagaagtac
tacccgagcgcggaggaggtgtacggggcggatgcggagacgctggtggagacggaggac
gcgcagggattggacgaaccgctggtgaagccggtgaagcgacgaaacatcgaggcgacg
gcggagagggagagcggtgggtccgggggggcgcgggcgcgggcgcagggcgcggaggtg
cggatgaagtgcggtgaggcgttcttgaacgggttggcgcgcgagagccggcggctggga
cgaaacgtgtgcgtttcgggacacttgcatcacgggaagacgacgctgttcgacatgctg
ctcgaggcgtcgcacgatgtggattatgagtggttggtgaacgaggagcgattgcgttac
gcggacacgcggttggacgaacaagcccgagggatctcgctcaagtcgacgccgatgacg
ctgccgctggagacgagtcgagggaaaacgatgttgatgaacttaatcgacactccgggt
cacgtgaactttagcgatgaagtgacggcgtcgatgcgcgtcgcagatgggctcttgctc
gtcgtcgacgcgtgcgagggggtgatgacgtcgacgacgcgacacatcaagcaggcggct
cgagacggtttgacgatttgcgtcttcatctcaaagctcgatcgattgatcgtcgagctc
aagcttccacccgcggacgcgtatcacaagcttcgacacacgatcgaggaaattaacacc
gcgatcgaggcgtgctacgctccggatgagaacggcgagttgcccactgtgagcccgcta
aagggcaacgtgtgcttcggtagcgccctgtacgggtttagtttcacgctcgagtcgttc
gccaggctctacgccgacatcagcggcgtgacggtcgatcacaaagagttcgggaagagg
atgtggggtgacgtgtactatcatagcgactcacgaacgttcaagaagaaggcacctccg
ggaggtggcgaacgcacctttgtgcagtttgttctccagccattgtacaaaattttcagt
caagttgtcggcgaggaggtcgagagcttgaccgacgcattgaaggagtttggcgttaaa
ctcaagcccaaagagaagcgggcgaacaccaaacctttgctcaagttgacgtgccaaaag
attttcggcggcacctccggtttggttgacatgctcgtcgcgcacgttccgacgcccgaa
gaaggagcttcgatgaaagttgaacgcacgtacagcggaccgattcgcggaggtggaaag
ctcgtggacgcgatgcttgcgtgtgatcccgaggcgccggcggtggtgatgatctccaag
cttattccgaagagcgactgctcagcattcgacgccctcggacgagtgatgtgtgggaca
ctcaagaagggtgatcacgtgcgcgttctcggcgaaaacttctctccggatgatgaagaa
gatgccgtcgtgaaggctgtgacgaatatgtggatttatgaggcgcggtaccgcattccc
atcaaggaggcgcgagcgggggcgtgggtgctcatcgaaggcgtcgatcagagcatcacg
accacggcgaccctcgtcccggatgtcatgcccaagggctacgacgacgacttgtacatc
ttcaagccattggagtttgacaataaatcggtgatgaagatcgcggcggaaccgctgaat
ccgagcgatttgccgaagatggttgagggcttgcgtaagatcaccaagtcatacccggcg
tgcgtgaccaaagtggaggagagcggcgagcacaccatcatgggcaccggcgagctttac
atggacagcatcatgaaggatctgcgtgagatgtacagtgagattgaagtcaaggtgagc
gaccccgtggtgtgcttcaacgaaacggttgtcgagacgagctcgctgaagtgctacgcg
gagacgccgaacaagaagaacaagctcactatgattgcggagccgttggataagggtctc
gcgagcgacatcgaaaccggcaagattcgtctggacgcgccgaagaagacggtgagcgac
ttctttaagaacaactacgattgggacgcgctggcggcgaagagcgtttgggcattcggc
cccgacaccacgggtccaaacgtgctcttagacgacacgttgccaaccgaggttgacaaa
aatttactcggtgcgatccgggattccatcgttcaggggtttcagtggggtgcgcgcgaa
ggtccgctgtgcgatgaaccgattcgtgacgtcaagtttaagattttggacgccttggtt
gccgatactccgctccagcgcggcggtggtcaaatcattcccaccgcgcgtcgatgcacg
tacagcgccttcctcatggccaccccgagacttatggaacctattcacgaggtggagatc
cagtgccccgcggactgcatgagcgccatctacactgtcctcagcaagcgccgtggacac
gtcgtgagcgatgcgccaaaacccggcaccccggtgtacaccgtaaaggcgctcatcccg
gcgattgaaacctttggatttgagacggaccttcgctaccacacgcaaggccaggcgttc
gggcagtcgtactttgaccactgggcggtcgttccgggcgatcctttggacaagacgatc
gtgttgcgaccgctcgagcccgcgcccgtccctcatctcgctcgcgagttcatggtgaag
acgcgacgacgcaagggcatgtccgaggacgtcaccgtcagcaaattcttcgacgacgac
cttctcatcgagctcgcccaggccgacgtcgaactcgccggcatgttttag
DBGET
integrated database retrieval system
