Onychostruthus taczanowskii (white-rumped snowfinch): 121339106
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Entry
121339106 CDS
T07590
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain
KO
K08132
collagen type XII alpha
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otc00535
]
121339106 (COL12A1)
Proteoglycans [BR:
otc00535
]
Extracellular matrix (ECM) proteoglycans
Others
121339106 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
DUF4998
Copine
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
121339106
NCBI-ProteinID:
XP_041266569
LinkDB
All DBs
Position
Unknown
AA seq
3122 aa
AA seq
DB search
MKTALCSAVAALCAAALLSSIEAEVNPPSDLNFTIIDEHNVQMSWKRPLDAIVGYRITVV
PTNDGPTKEFTLSPSTTQTVISDLIPDVEYIVSIASYDNREESLPVFGQLTIQTGGPGIP
EEKKVEAQLQRCSISAMTDLVFLVDGSWSVGRNNFGYILDFMVALVSAFDIGEEKTRVGV
VQYSSDTRTEFNLNQYFRRSDLIDAIKRIPYKGGNTMTGEAIDYLVQNTFTESAGARKGF
PKVAIVITDGKAQDDVEIPARELRNIGVEVFSLGIKAADAKELKLIASQPSLKHVFNVAN
FDGIVDIQNEIILQVCSGVDEQLGELVSGEEVVEPPSNLVATQVSSKSIRITWDPSTSQI
TGYRLQFIPMIAGGKQHVLSVGPQTTALNVKDLSPDTEYQINVYAMKGLTPSEPITIMEK
TQQVKVQVECSRGVDVKADVVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPRKVQISL
VQYSRDPHMEFSLNRYNRVEDIIQAINTFPYRGGSTNTGKAMTYVREKVFVTSKGSRPNV
PRVMILITDGKSSDAFKEPAIKLRDADVEIFAVGVKDAVRTELEAIASPPADTHVYTVED
FDAFQRISFELTQSVCLRIEQELAAIRRKSYVPAKNMVFSDITSESFKVSWSPAGSEVLS
YLIKYKVAVGGDEFIVSVPASSTSSVLTNLLPETTYAVSVISEYEDGDGPPLDGEETTLE
VKGAPRNLRITDENTDSFVVGWTPAPGNVLRYRLVYRPLTGGETRQVTVSANDRSTTLQN
LIQDTRYEVSVVPEYQSGPGNSLNGYAKTDEVRGNPRNLRVSDATTSTMKLSWAAAPGKV
QQYFITYTPVAGGETKEVTVKGDTTSKVLKGLDQATRYALTVSALYASGAGDALSGEGET
LEERGSPRNLVTTDITDTTVGLSWTPAPGTVDHYRIVWKSHYDDTMGEKRVPGNTVDAVI
EGLEPETKYRISVYAAYSSGEGDPVEGEAFTDVSPNARTLTVDNETENTMRLTWKPSPGK
VLSYRVNYRARSGGRQMSGRVNAPATSIVLKRLKPRTTYDLTVVPIYDFGHGKSRKGEGT
TASPFKPPRNLRTSDSTMSSFRVTWEPAPGRVKGYKVTFHPTEDDGSLGELIVGPYDSTV
VLEELRAGTTYKVNVFGMFEGGESNPLVGQEMTTLSDTTTEPFLSRGLECRTRAEADIVL
LVDGSWSIGRPNFKTIRNFIARIVEVFDIGPDKVQIGLAQYSGDPRTEWNLNAYRTKQSL
LEAVANLPYKGGNTLTGMALDFILKNNFKPVAGLRPRARKIGVLITDGKSQDDVVAPSRK
LRDEGVELYAIGIKNADENELKQIATDPDDIHAYNVADFSFLATIVDNVTTNLCNSVKGP
GDLPPPSNLVISEVTPRSFRLRWSPPPESVDRYRVEYYPTSGGSPKQFYVSRMERTTVLK
DLQPETEYVVNVFSVVEDESSEPLIGRETTLPISSVRNLNVYDIGSTYMRVRWEPLNGAT
GYLLTYEPVNATVPATEKEMRVGPSVNEVQLVDLIPNTEYTLTAYVLFGDMQSDPLTTQE
VTLPLPGPRSLTIQDVTHSTMKVVWDPAPGKVRKYILRYKIADDADVKEVELDRLKTSTT
LSDLSSQTLYNVKVVAVYDEGESIPTNAEAVTQPVPAPANLRITDITTNSFRGTWDHGAP
DVSLYRITWGPYGRGEKQETILNGEENSVVFENLNPDTLYDVSVTAIYPDESESDVLIGS
ERTLPLVPITTQAPKSGPRNLQVYNATSHSLTVKWDPASGRVQRYRIVYQPISGDGPEQS
TTVGGRQNSVVIQKLQPDTPYAITVSSMYADGEGGRMTGRGRTKPLTTVKNLLVYDPTTS
TLNVRWDHAEGSPRQYKVFYRPTAGGAEEMTTVPGNTNYVILRTLEPNTPYTVTVVPVFP
EGDGGRTSDTGRTLERGTPRNIHVYNPTPNSMNVRWEPAPGPVQQYRINYAPLSGPRPSE
SIVVPGNTRDVILERLTPDTAYSINVIALYADGEGNPSQAQGRTLPRSGPRNVRVFDETT
NSLSVQWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGIRNNVILQPLQSDTPYKITVVAV
YEDGDGGQLTGNGRTVGLLPPQNMYITDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
REFFVGEVTSYILHNLSPSTTYDVNVYAQYDSGMSIPLTDQGTTLYLNVTDLTTYKVGWD
TLCIRWSPHRSATSYRLKLNPTDGSRGQEITIRGSETSHCFTGLSPDTEYNATVFVQTPN
LEGPPVSMREHTVLKPTEAPTPPPTPPPPPTIPPARDVCRGAKADIVFLTDASWSIGDDN
FNKVVKFVFSTVGAFDLINPAGIQVSFVQYSDEAKSEFKLNTFDDKAQALGALQNIQYRG
GNTRTGKALTFIKEKVLTWESGMRRGVPKVLVVVTDGRSQDEVRKAATVIQHSGFSVFVV
GVADVDYNELAKIASKPSERHVFIVDDFDAFEKIQDNLVTFVCETATSTCPLIYLEGYTS
PGFKMLESYNLTEKHFASVQGVSLETGSFPSYVAYKLHKNAFVSQPIREIHPEGLPQAYT
IILLFRLLPESPNEPFAIWQITDRDYKPQVGVVLDPASKVLSFFNKDARGEVQTVTFDND
DVKKIFYGSFHKVHIVVTSSNVKIYIDCSEIMEKPIKEAGNITTDGYEILGKLLKGDRRS
ATLEIQNFDIVCSPVWTSRDRCCDLPSMRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGLTGSSGPPGPRGETGPPGPQGPPGPQGPNGLSIPGEPGRQGMKGDAGQPG
LPGRSGTPGLPGPPGPVGPPGERGFTGKDGPTGPRGPPGPAGAPGVPGVAGPSGKPGKPG
DRGTPGTPGMKGEKGDRGDIASQNMMRAVARQVCEQLINGQMSRFNQMLNQIPNDYYSNR
NQPGPPGPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGIPGEKGERGTGSQGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNAGIRGPPGPPGYCDSSQCASIPYNGQG
FPEPYVPESGPYQPEGEPFIVPMESERREDEYEDYGVEMHSPEYPEHMRWKRSLSRNAKT
KQ
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagcgctgtgctcggcagtcgctgctctgtgtgcagccgccctcctctcctcc
atcgaggctgaagttaacccaccatcagacttgaattttacaattatagatgaacataat
gttcaaatgtcatggaaaaggccactggatgcaatagtgggttacagaataactgtggtt
ccaacaaatgatggacctactaaagaatttactctttcacctagcactacccaaactgtc
atatcagatcttatacctgatgtagagtatattgtatcaatagcttcatatgacaacaga
gaggagagtctgcctgtttttggccagctgacaattcagacaggcggcccagggatacca
gaggaaaagaaggttgaggctcaattacaaagatgctccataagtgcaatgacagattta
gttttcctggtagatggttcatggagtgtaggaagaaataactttggatatattctggac
ttcatggttgctcttgtatcagcttttgacattggggaagaaaagacaagagttggagtt
gttcagtacagttcagatacaagaacagagttcaatttaaatcagtatttcagaagaagt
gatctgattgatgcaattaaaaggataccttacaaaggtggcaacacaatgacaggtgag
gctattgattaccttgttcaaaacaccttcactgagtctgctggagcaagaaaaggcttt
cccaaagtagccattgtcattactgatggaaaagctcaagatgatgtagaaattcctgca
agagagcttcgcaacataggagttgaagttttttccttgggtatcaaagcagcagatgca
aaggaactcaagctaattgcatctcagccatcactgaaacatgtgttcaatgtggctaat
tttgatggaattgtggatatacagaatgaaattatcttgcaagtgtgctctggtgttgat
gaacaactaggtgaactggttagtggggaagaagtggtggagcctccttcaaatctggtg
gcaactcaggtctcctcaaaatctattagaatcacttgggatccatccacaagccaaata
actggctatcgtctgcagttcattccaatgatagctgggggaaaacaacatgtactgagt
gtgggtcctcagacaactgctctgaatgttaaagatctctctccagacacagagtaccaa
attaatgtttatgcaatgaaaggactgacccccagtgagccaataacgataatggaaaaa
acacaacaagtaaaagttcaagtggagtgctcacgtggtgtggatgtaaaagctgatgtt
gtgtttttagtggatggttcctacagcattggtatcgccaattttgtaaaagtaagagcc
tttttggaagtgttagttaaaagctttgagatatcacctcgaaaagtacagataagtctt
gtccaatacagcagagatccccatatggagttttctttgaacagatacaacagagtggaa
gacataattcaggctattaacaccttcccctacagaggtggatctaccaacacaggcaaa
gcaatgacatatgtgagggagaaagtgtttgttaccagcaaaggatcaagaccaaacgtg
ccaagagtaatgattcttatcactgatggaaaatcgtcagatgcttttaaagaacctgca
attaagctgagggatgcagatgtagaaatatttgcagttggtgtgaaggatgcagtgcgc
acagagttggaagctatcgcatcacctcctgcggacacccatgtttacacagtggaagac
tttgatgcttttcaaagaatatcatttgaacttacacagtctgtctgcctacgaattgag
caggagctggctgctataaggagaaaatcttacgtacctgcaaagaacatggtcttttct
gacataacatcagagagtttcaaagtgagctggtctccagctggatctgaggttttgtcc
tatctcattaaatacaaagtagcagtcggtggagatgaattcattgtttcggtaccagct
tcaagtactagctcagttctcaccaacttactacctgaaactacttatgcagtcagtgtg
atttctgaatacgaagacggtgatggccctcccttggatggagaggaaaccaccttagaa
gttaaaggtgctcctcgaaacttaaggattacagatgaaaatactgatagctttgtagtt
ggctggactccagctccaggaaatgtcctacggtacaggcttgtttatagaccacttact
ggaggagaaacgagacaagtgactgtctcagcaaatgataggtcaactactctgcagaat
ttgatccaagatacaagatatgaagtgtctgttgttcctgagtatcagtctgggcctggg
aattcattgaatggatatgcaaaaactgatgaagtccgaggaaatccaagaaatttgaga
gtttctgatgctacaacatcaacaatgaagttgtcttgggctgctgctcctggcaaagtg
cagcagtactttataacatacactccagtcgcaggaggtgaaactaaggaagtgactgtg
aaaggtgacactacctctaaagtgctgaaaggcttggaccaagccactaggtatgcgctg
actgtgtctgccttgtatgcctctggagcaggagatgccctttcgggagagggagaaaca
cttgaagaacgcggttcaccacgtaatttggttaccacagacataactgacactacagtt
gggttatcatggacaccagctccaggaacagttgaccattacaggatagtatggaaatca
cattatgatgacaccatgggagagaagagagtccctggaaatacagttgatgctgtgata
gaaggcttggagccagagactaaatacaggatttccgtatatgcagcctacagcagtgga
gaaggagacccagttgaaggagaggcttttactgatgtgtcaccaaatgccaggactctg
acagtagacaacgagacagaaaatacaatgagacttacgtggaagccttcgcctgggaaa
gtcttgtcttaccgtgtgaactacagagcgcgcagcggaggaaggcaaatgtctggaaga
gtaaatgctcctgctaccagcatagtgttaaagagacttaagccccgcactacatatgac
ctaactgttgttccaatttatgattttggacacggcaaatcaagaaaaggagaaggaaca
acagcctctccctttaagccacctcgaaatctgagaacttctgattcaactatgtcaagc
ttccgagtaacctgggagccagccccagggagagtgaagggctacaaagtaactttccac
cctactgaagatgatgggagccttggagaattaatagtggggccatatgacagcacagta
gtattggaggagcttagggcaggaactacctataaggtaaatgtttttgggatgtttgaa
ggaggagagagcaaccctctggttggacaagagatgaccaccctttcagatactactacg
gagccatttttatctagaggtttagaatgtagaaccagagcagaagctgatattgtgctg
ctggtggatggctcatggagtattgggcggccaaattttaaaaccatcaggaacttcatt
gcccgtattgttgaagtttttgatattggtcctgacaaagtacagattggtcttgcacag
tatagtggtgatcccaggacagaatggaatctcaatgcttaccgaaccaaacagtctttg
ttagaggctgtagccaacttaccatacaaaggaggcaatactctaacaggaatggccttg
gatttcatcttaaaaaacaacttcaaaccagttgccggcttaaggcccagagctcgcaaa
attggtgttctcatcactgatggcaaatcacaagatgatgtagttgccccttcaagaaaa
ctcagagatgagggagtggaactgtatgcaattggtattaaaaatgcagatgaaaatgaa
ttgaagcagattgcaacagatccagacgacatccatgcttacaatgttgcagatttctct
ttcctggctaccattgttgataatgtaaccacgaatctgtgtaacagtgtgaaaggtcca
ggtgatttgccacctccttcaaatttagttatttcagaagtaacacctcgttctttcaga
ctgagatggagcccacctcctgagagtgttgatagatacagagtagaatattaccctacc
tctggaggtagtcctaaacagttttatgtaagtaggatggaaagaacaacagttctgaaa
gatctgcagcctgaaacagaatatgtggttaatgtgttttctgtggtagaagatgaaagc
agtgaacctctgatcggcagggaaacaactttgccaatctcttcagttagaaatttgaat
gtttatgacattggatcaacttacatgcgagtgagatgggaacctctcaatggagccact
ggttatttgttaacatacgaacctgtgaatgccacagtcccagccacagagaaagagatg
cgtgtgggaccatcagtgaatgaggtgcagctggtagatctcatccccaacaccgagtac
actttaacagcttacgtattgtttggtgatatgcagagtgacccactcaccacacaggaa
gttacattacctttgcctggacccagaagtttaacaattcaggatgttactcacagcacc
atgaaagtcgtttgggatcctgccccaggaaaagttcgaaaatacatcctaagatacaaa
atagctgatgatgctgatgtaaaggaggtggaacttgaccgactcaaaaccagcactact
ctctctgatctttcctcccaaacactgtacaatgtaaaagttgttgctgtgtatgacgaa
ggggaatccataccaacaaatgcagaagctgtcactcaacctgtgccagcaccagccaat
ctcagaatcacagatataactacaaatagtttcagaggtacttgggatcatggagctcca
gatgtctctctatatagaataacatgggggccctatggaagaggagaaaaacaggagact
atcttaaatggggaagagaatagtgtggtctttgaaaatttgaatccagatacattatat
gatgtctcagttactgccatctatcctgatgaatcagaaagtgatgtgctcattggcagt
gaaagaacattacccttggtacctatcactacacaagccccaaagagtggcccacgaaac
cttcaggtgtacaatgcaacttcacacagtttgactgtcaaatgggatcctgccagtggt
cgagtgcagagatacaggattgtttaccagcccatcagtggggatggccctgaacagtcg
actactgttgggggacgacagaacagtgtggtgatacagaagctgcagcctgacacacca
tatgctattactgtgtcatcaatgtacgcagatggtgaagggggacgaatgacaggacga
ggcagaaccaaaccgctcactactgtgaagaacttgctagtttatgacccaaccaccagt
actctgaatgttcgatgggatcatgcagaaggaagtcctcgccagtacaaagtattttat
agacctacagctggaggtgcagaagaaatgaccacagtaccaggaaatacaaactatgtc
attctgaggactcttgaacccaacacaccttacactgtaactgtggttccagttttccca
gagggggatggtggacgtacctctgacactggacgcaccttggagagaggaacaccaaga
aacattcacgtttacaatcccacaccaaacagcatgaatgtccgttgggaacctgctcca
ggtccagtacagcaatatagaattaattatgctccactgtctggcccaaggccatcagaa
tctattgtggtgccaggcaacactcgtgatgtgattctggagcgcttgactcctgacacc
gcttactcaataaatgttatagctctgtatgcagatggagagggaaatccaagccaagca
cagggaagaacattgcctcgcagtggcccaaggaatgtgagagtatttgatgagactaca
aacagcctttctgtgcaatgggaccatgctgatgggccagtccagcagtacagaatcatt
tattcacccactgtgggagaccctattgatgaatacacaacagttcctggcataaggaat
aatgtgatactgcaaccactacaatcagatacgccatataaaattactgttgttgctgtg
tacgaagatggagatggtggacaactgactggaaatggcagaactgttggcctgcttcct
cctcaaaatatgtatataactgatgaatggtatacacgcttcagagtttcctgggatcct
tcaccatcccctgttcttggctataaaattgtatacaagcctgtgggttcaaatgagccc
agggagttttttgtgggagaagtgacttcctacattttgcataatctgtctcccagtact
acttatgatgtgaatgtttatgcccagtatgattctggaatgagcatacctttgacagat
caaggcactacattatatttaaatgtcactgacctaacaacttacaaagtgggttgggat
actctctgtattcgatggtcacctcatcggtcagcaacttcctacagactgaagctaaac
ccaactgatggttccagaggacaggagatcacaattcgtgggtcagaaacaagccactgt
tttactggcctctcaccagacacagaatacaatgctactgtctttgttcagacccctaac
cttgagggacctccagtctctatgagggagcatacagtcctcaaacctacagaggcacca
actccaccacctacacctcctccacctcccacaatccctccagctcgggatgtatgcaga
ggtgccaaagcagacatagtattcttgactgatgcttcctggagtattggtgatgataat
ttcaacaaagtagtgaaatttgttttcagtacagtaggagcctttgatttaatcaatcct
gctggaatccaggtttcatttgtgcagtacagtgatgaagcaaaatctgaatttaagctg
aatacatttgatgacaaagcccaggccctgggtgctcttcaaaacattcagtacagagga
ggaaacacaaggacaggcaaagccctaacatttatcaaagaaaaggttttgacttgggag
agtggcatgaggcgaggtgttcccaaggtacttgttgttgtcacagatggtcggtctcag
gatgaggtgaggaaagcagcgacagtcatacagcactctggcttcagtgtctttgtagtt
ggtgtggctgatgtggattacaatgaactggccaagattgctagcaagcccagtgagcgt
catgtgtttattgttgatgactttgatgcctttgagaagattcaagacaaccttgttacc
tttgtgtgtgagacagctacctcaacttgtccccttatttatttggagggatacacttca
cctggtttcaagatgctggaatcatacaatctaacagagaagcattttgcttctgtacaa
ggagtttcactggaaacaggctctttcccaagctatgtagcatataaactccacaaaaat
gcctttgttagccagccaatacgggagattcacccggaggggctgccacaggcgtacact
atcattctgttgttccgtcttctgcctgaatcccccaatgagccttttgcaatttggcag
attaccgacagagattacaaaccacaagttggagttgtgcttgatcctgccagcaaagtg
ctgtcattctttaacaaggatgcaagaggagaggttcaaactgtaacttttgacaatgat
gatgtaaagaaaatcttttatggaagcttccataaggtccatattgttgttacttcatca
aatgttaagatttacattgactgcagtgaaataatggaaaaaccaattaaggaggctggc
aatatcacaactgatggctatgaaatacttgggaaacttctaaaaggcgaccgaagatca
gcaacattagaaatccagaattttgacattgtatgcagtccagtttggactagcagagac
agatgctgtgatctcccttctatgagagatgaagcaaagtgcccagctcttccaaatgct
tgtacctgtactcaagacagtgtgggacctccaggacctcctggaccagctggtggccca
ggtgctaaaggtcccagaggtgaaaggggtttgactggatcatctgggcctcctggtcct
cgtggtgagacaggtcctccaggtcctcaaggtcccccaggtccacagggtcccaatgga
ctgtcaatcccaggtgaaccgggtcgtcaaggaatgaaaggggacgctggccagcctgga
ctcccggggcgatcgggaacaccaggtttacctggtccacctggaccagtgggacctcca
ggagaaaggggtttcacaggaaaagatggtcccacaggtcccagaggtccaccaggacca
gcgggtgctcccggagttccaggagttgctggtccaagtggaaaaccagggaaaccagga
gatcgtgggacaccaggtacacctggaatgaagggagaaaaaggtgacagaggtgatatt
gcttctcaaaacatgatgcgagcagttgcgagacaagtttgtgaacaactgataaatggt
caaatgagccggttcaatcaaatgctgaatcaaattccaaatgattattattcaaaccga
aaccagccagggccaccaggtccacctggtcccccgggagctgctggaacaagaggagaa
cctggacctggaggaagaccaggattcccaggacctcctggggttcaaggaccacctggt
gaaagaggaatccctggagagaaaggtgaaagagggactggatcccaaggaccacgaggt
ttgccaggaccacctggtccacaaggagaatctagaactggtccaccaggctccacagga
tcacgaggaccaccagggccaccaggccgtcctggaaatgcgggtattcggggtccccca
gggccaccaggatattgtgattcgtcccagtgtgctagcatcccttacaatggccaaggg
ttcccagaaccatacgtgcctgaaagtggaccctatcagcctgaaggtgaaccctttata
gtacctatggagtcagaaaggagagaggacgagtatgaggactatggagttgaaatgcat
tcaccagaataccctgagcacatgcgctggaaaaggtcactgtcaagaaatgcaaaaaca
aagcagtaa
DBGET
integrated database retrieval system
