KEGG   Ottowia oryzae: C6570_11240
Entry
C6570_11240       CDS       T05363                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
otk  Ottowia oryzae
Pathway
otk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:otk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C6570_11240 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otk03400]
    C6570_11240 (ligD)
Enzymes [BR:otk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C6570_11240 (ligD)
DNA repair and recombination proteins [BR:otk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C6570_11240 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AVO34737
UniProt: A0A2S0MG11
LinkDB
Position
complement(2454918..2457650)
AA seq 910 aa
MPATRRAKAKSTQQKTRPAPVQIAPGATKSEASAPPSPLARYHAKRDFRRTPEPEGAVAA
PAAEGLRYVIQKHWASHLHYDLRLELDGTMHSWAVPKGPSLDPADKRLAVQVEDHPIAYN
RFEGQIPAGQYGAGRVIVWDRGSWSPVGDPVAGLAKGHLKFDLHGIKLRGRWALVRLKDA
NAKQPPWLLIKDRDGESRPPPYSVTDALPDSVGPSDEDARAAPASPPGALTPPLNTPANT
ASATPDAPGKAKRTRANPAPRPARASALPTDLAPQLAQARSAPPEDAAAWQWEMKFDGYR
LLARVDATGAVRLVTRNGLDWSARMPEVARALAALGLAGGWLDGEVVMPGASGMPDFAAL
QRAFEARRTGDLVYYLFDAPWLRGTDLTDLPLAERRARLVAALPALAGNGTVRLSAVLPP
EPRSLLASACGMGLEGVIGKRLDAPYRNGRSDAWIKLKCGQEDEFIIAGFTTGQGARAAQ
GHLGALVLAAHDPDHPQGPLRWAGNVGSGFTGAALAALQRRLAPLHRGSSPLAPGDQVPG
RVQWVQPELVAQVRHAGITPQGHVRQAVYRGLREDKAASEVVLPQIDKPNQPLAQMQPTP
AAIQSGASMDSDNVLVGQQLTHPERVIDPASGTTKLDLARYYATVAPLIQPHLLHRPVAL
LRAPDGLGGELFFQKHAQGQPLAGVTQLPAALDPGHAPLMAIDSAQALLAVVQMNTVELH
TWNATADKIERPDRLVIDLDPGEGVPWAKVQEAAQLTRTLLTELALVPFLKTSGGKGLHV
VVPIKRLYDWDAVKDFSRALTEHLARLMPDRFTAISGPKNRVGRIYPDYLRNGRGATTAA
AWSARARPGMGVSVPIGWDELARVTGGAHWTVGTIGPRLRIGNAPWGDWASAARPIGAAA
RRLKSADTCR
NT seq 2733 nt   +upstreamnt  +downstreamnt
atgcctgctactcgccgtgcgaaggccaagtctacgcaacaaaaaacgcggccagcgccc
gtccagattgcgccaggagctaccaaatctgaagcatccgcgccacccagcccgctggcc
cgctaccacgccaagcgggatttccgccgcacgccagagcccgagggcgccgtggctgcg
ccagcggcagaggggctgcgctacgtcattcaaaagcactgggccagccacctgcactac
gacttgcggctggagctggacggcaccatgcacagctgggccgtgcccaagggccccagc
ctggacccggccgacaagcgcctggccgtgcaggtggaagaccaccccatcgcctacaac
cggttcgaggggcagattcccgccgggcagtacggcgcgggccgcgtcatcgtgtgggac
cgcggcagctggtcgccggtgggcgacccggttgcgggcctggccaaagggcaccttaag
tttgacctgcacggcatcaagctgcgcggccgctgggcgctggtgcggctgaaagacgcc
aacgccaagcaaccgccctggctgctgatcaaggaccgcgacggtgagtcccgcccgccg
ccctacagcgtgaccgatgcgctgcccgattcggtgggaccgtcagatgaagacgcgcgc
gccgcaccggcaagcccgccgggcgccttgacgccgcccttaaacacgcccgcaaacacg
gcttccgccacgccagatgcaccaggcaaggcaaagcggacgcgggccaaccccgcaccc
cgcccggcacgcgcttctgccctgcccaccgatttagcgccgcaactcgcccaagcccgc
agcgcaccgcctgaagacgccgccgcgtggcagtgggagatgaagttcgacggctatcgc
ctgctggcccgcgtggacgcgactggcgccgtgcgcctggtcacccgcaacgggctggac
tggtcggcgcgcatgcccgaggtggcgcgcgccttggctgcgctgggcttggcgggcggc
tggctggacggcgaagtcgtgatgcccggcgccagcggcatgcccgactttgccgcgctg
cagcgcgcgtttgaagcgcggcgaaccggcgatttggtctattacctgttcgacgcgccg
tggctgcgcggcaccgatttgaccgacttgcccctggccgaacgccgcgcgcgcctcgtc
gctgccctgcccgccttggccggcaacggcacggtgcgcctgtccgccgtgctgccgccc
gagccgcgcagcctgctggccagcgcctgcggcatggggctggaaggggtgatcggcaag
cgcctggacgcgccctaccgcaacggccggtcggacgcgtggatcaagctgaaatgcggg
caagaggatgaattcatcatcgccggcttcaccactggccaaggcgcgcgcgccgcccaa
ggccatctgggcgcattggtgctggccgcacacgacccagatcacccgcaaggcccgttg
agatgggctggcaacgttggcagcggcttcacgggcgcagcgctcgccgcgctgcaacgt
cgcctggcaccgcttcaccgaggcagcagcccactggcgcccggcgaccaggtgcctggg
cgggtgcagtgggtgcagcccgagttggtggcacaggttcgccacgcagggatcactccg
caaggtcacgtgcggcaggcggtgtaccgcggcctgcgcgaggacaaagccgccagcgaa
gtggtgctaccccaaattgacaaaccaaatcagccgctggcgcagatgcagcctacgcca
gcagctattcaatcaggagcaagcatggactctgacaatgtgctggtcggccagcagctg
acgcaccccgagcgggtgatagaccccgccagcggcaccaccaagctggatctggcgcgc
tactacgccaccgtggcgccgctcatccagccgcacctgctgcaccgcccggtggccttg
ctgcgcgcgccggacgggctggggggcgagctgttctttcaaaagcacgcgcagggtcag
ccgctggccggggtgacgcagctgcccgccgcgctggacccaggccatgccccgctgatg
gccatcgacagcgcccaggcgctgctggccgtggtgcagatgaacactgtcgagctgcac
acctggaacgccaccgccgacaagatcgagcggcccgaccgcctggtgatcgacctggac
cccggcgaaggcgtgccctgggccaaggtgcaggaagccgcgcagctcacccgcaccctg
ctgaccgagctggcgctggtgcctttcctcaagaccagcggcggcaaggggctgcacgtg
gtggtgcccatcaagcgcctttacgactgggacgcggtgaaggatttcagccgcgcgctg
accgaacacctggcccgcctgatgcccgaccgcttcaccgccatcagcggccccaagaac
cgcgtgggccgcatctaccccgactacctgcgcaacggccggggcgcgaccaccgccgct
gcatggtcggcccgcgcccggcccggcatgggcgtatcggtgcccatcggctgggacgaa
ctggcccgcgtgaccggcggcgcgcactggacagtgggcaccatcgggccgcgcctgcgc
atcggcaacgcgccttggggtgactgggccagcgctgcccggcccattggtgcagcagcg
cggcggctgaaaagcgccgatacgtgccgataa

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