Oncorhynchus tshawytscha (Chinook salmon): 112214637
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Entry
112214637 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor-related protein 10
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112214637
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112214637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
PBSX_XtrA
Motif
Other DBs
NCBI-GeneID:
112214637
NCBI-ProteinID:
XP_024229312
LinkDB
All DBs
Position
LG09:60268462..60283977
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AA seq
1059 aa
AA seq
DB search
MTVSFNLCVINILFVTAYSSLELVSSTAHCGRSPQVLEAARGEIRSFVHRSSSYRPRPFY
CSWIIKAHVGEPVILSFSQFSTRCKKEWVSVTSSTGKPITFCGSDLPKPMELMGGNITVT
HHFLPHLFPVSAFRLGYVRDSGDCTGVDFECLGGRCLPLSWRCNGRVECLGEGVGLGIDE
QDCDGEMKILNLDPEHGKTVVATTTPESYRARETVREKNRRSNSRGRDWETLGKAPGELE
KEEEETEKQVDENGDHTKEKEPTNPIYDFWQFQAHRAHPSVTRAPVEWPCGGLLQAFYGT
FTPPSIRGPSLFCVWTLDPQESRPLKLDLRLLELGPGDTVTITDRQQGTGELLKTITSAS
NYKAIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAVGGCYTQEQKC
DGHWDCPETGHDEAGCRGCPQDQFACGVAGQRALLAGHRFLGRPVCFPAKERCNSQLYCS
DGSDERDCSICQPGTFHCDSDRCVFESWRCDGQLDCKDGTDELNCTVTLPPKVVTCGGLL
QTFYGTFAPPSIRGPPLLCVWTLDPQDSRPLKLDLRLLELGPGDTVTITDRQQGTGELLK
TITNTSNYKTIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAAGGCY
TQEQKCDGHWDCPETGHDEAGCRGCPRDQFACGVAGQRALLAGHSFLGRPVCFPAKERCN
YQLYCSDGSDERDCSICQPGTFHCDSDRCVFESWRCDGQVDCKDGTDELNCSVTLPRKVI
TAATVGSLVCGLLLVIAMGCTCKLYSLRTREYSMFAPISRQEAALIQQQAPPSYGQLIAQ
GIIPPVEDFPTENPNESSSLTLRGILQLLRQDTANSPRRRRRPRFVRRAVRRMRRWGLIP
RTASRPSQPSSSAPQQTDPTSTGAESSQSTPTTSSLAVEAVNLPLPQKLGLLPQTVQHPP
PPPPTSLPPPLVSIPATPQSFPVAAPPIPSSPSLASLFHSLGRGISRFRASPFSSSSPTN
SLPLSASPSFSSSEDEVLLIPLSEDMTSEDDVPLLTLDP
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctctttcaacctttgtgtcatcaacattttgtttgtaactgcctacagcagc
ctggagctggtctccagtactgctcattgtggacgatctccccaagtcctggaggctgcg
agaggagagatcagaagctttgtgcaccgcagctcgtcctaccgtcctcggcccttctac
tgtagttggattatcaaggcgcatgtaggagagcctgttattctcagtttctcccagttt
tccacacggtgtaagaaggaatgggtctcggtgacgtcatcgactggcaagcccattacc
ttctgtggttccgacctgccgaaacccatggagttgatggggggaaacattacagtgacg
caccacttcctgccacacttattccctgtgtctgcgttccgcctgggctatgtcagagac
tccggggactgtacgggtgtggactttgagtgtttgggcgggcgctgcctgcccctgtcg
tggcgttgtaacggccgggtggagtgcctgggtgaaggggtgggcctgggcatagacgag
caagactgtgatggagagatgaagatcctgaatctggatcctgagcatggcaaaacagtg
gtggccaccaccacaccagagtcctacagggcgcgggagaccgtaagagagaagaacagg
aggagtaacagcagagggagggattgggaaacattagggaaggcaccgggcgagctggag
aaagaggaggaggagaccgagaagcaagtagacgagaatggggaccacaccaaggaaaag
gagccaaccaatcctatatatgacttctggcagttccaggctcacagagcccaccccagt
gtgacccgggcccccgttgagtggccctgcggaggcctcctccaggccttctatgggacc
ttcacccctccttccatcaggggcccctctctgttctgtgtgtggaccctggacccacag
gagtcaaggcctctgaagctggacctgcggctgctggagctggggcctggagacacggtc
accatcactgacagacagcagggcaccggggaactactcaaaactatcaccagcgcgtcc
aattacaaggccatccaggtcgagtcccggaccggcctcctctccttgacctatcgtacg
ctccccggctctgaggggctgggcttcaacgccacctaccgtgtcgggggctactgcccc
ccctgggaaggtaaatgtgggggtgccgtggggggctgctacacccaggaacagaagtgt
gacgggcactgggactgtcccgagacgggacatgacgaagcagggtgcaggggatgtccc
caggaccagtttgcctgtggagtggctgggcagagggcactgctggcggggcataggttc
ctagggcgtccggtgtgtttccctgccaaggagaggtgtaactcccagctgtactgttct
gatgggagcgatgagagagattgttctatatgtcaacctgggaccttccactgcgacagt
gacaggtgtgtttttgagagctggcgctgtgacggccagctggactgcaaggacgggaca
gacgagctgaactgcaccgtgaccctacctcccaaggtcgtcacctgcgggggcctcctc
cagaccttctatgggacgttcgcccctccttccatcaggggcccccctctgctctgtgtg
tggaccctggacccccaggactctaggcctctgaagctggacctgcggctgctggagctg
gggcctggagacacggtcaccatcactgacagacagcagggcaccggggaactcctcaaa
actatcactaatacgtccaattacaagaccatccaggtcgagtcccggaccggcctcctc
tccctgacctatcgtacgctccccggctctgaggggctgggcttcaacgccacctaccgt
gtcgggggctactgccccccctgggaaggtaaatgtgggggtgccgcggggggctgctac
acccaggaacagaagtgtgacgggcactgggactgtcccgagacgggacatgacgaagca
gggtgcaggggatgtccccgggaccagtttgcctgtggagtggctgggcagagggcactg
ctggcggggcatagcttcctagggcgtccggtgtgtttccctgccaaggagaggtgtaac
taccagctgtactgttctgatgggagtgatgagagagactgttctatatgtcaacctggg
accttccactgcgacagtgacaggtgtgtgtttgagagctggcgctgtgacggccaggtg
gactgcaaggacgggacagatgagctgaactgttccgtgaccctgcctcggaaggtcatc
accgcggcaactgttggcagcttggtctgtgggctgttgctggtcatcgctatgggctgc
acctgcaagctttactcactgcgcacccgagaatacagtatgtttgctccaatcagccgc
caagaggcggcgctgatccagcagcaggctcctccctcctacggtcagctgattgcccag
ggcatcatccctccagtggaggacttccccacagagaaccccaacgagtcttcctctctt
actctgagaggtatcctccagctcctcagacaggacaccgccaactctccacgacgccgt
cgccggccccgattcgtccgccgggctgtccgtcgcatgcggaggtggggcttaatccct
agaaccgcctccaggccctcccagccttccagttccgccccccagcagacagatcccacc
tctactggtgcagagtccagtcaatcaactcccacaacttcctcattggctgtggaagcc
gtcaatctgcctttgccacagaaactaggcttgctccctcagacggtgcagcacccacca
ccgccgcctcccacctcccttcctccacccctcgtctctatcccagccaccccccagagc
ttccctgtggctgcccctcccatccccagtagcccctccctggcctcgctcttccactct
ctggggcgcggtatctctcgcttccgcgcctcaccgttctcctcctcctcccccaccaac
tccctgcccctctccgcatccccctctttctcctcttcggaggatgaggtgctgcttatc
cccctctcggaggacatgacctcggaggatgacgtccccctgctaacccttgatccctga
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