Oncorhynchus tshawytscha (Chinook salmon): 112215198
Help
Entry
112215198 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112215198
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112215198
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
112215198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
112215198
NCBI-ProteinID:
XP_024229902
LinkDB
All DBs
Position
LG16:complement(58615374..58625273)
Genome browser
AA seq
670 aa
AA seq
DB search
MGCRLSGQGQWADNGNGVKGRDLSHLSHREKLQFRGDGYEQPITMQIEGRHRRGRRRHHS
QYPVSDCGTQTEQQSWEALRALGEGEGAGPGLCAYASGPYYDHMTLPPELYAANGYLPSV
AYNLEDINRIEYDDDPEMMTNQPNNRNCLIGCCNTDNDEPSSFLSQSEYEGHWLDRPLNY
LPLHELDSGLGCTDGSLHQGDLSDPETEEGVEAPMSSPPGNTSRGSSPSSESLLSSELSD
SGFHSVSTGEFRHFQKIIDGRIHNYRSRVVPREQRSKSRWDLESIPETLTCDPQAGRAAD
GVHTAMTHQCTMGSSSIQFRKARSPQLSRHGTGFAPRVAASSCRTEPCQRRALMLNQHSS
EDLPSRSHTVHDLSDRRRASHPALPAGNTATGKYRHVNRQPPSSPNHLAVPTENSGTGQY
NRGFNTDISEKRRCPLSDHVEGTWQGCVDNHRSSMASEEYNSEKQGLSKSPSKKQRGKEP
ADWRQFATLGHPHIGGDWPQADCPCGPLYSTLDGPSARSRRGLSGNPRAVRNQLLKARAS
RLADERSEVTTDEEARGEAWAGRYWNRTERRRHLAWAREQRQRKLNRGAEGAGENGTGGT
GVAGGLGGAGGPGGGCSTVLELSHRKQSRLRNHKLLDDWTTVEELLTHGTRVGQGDNIHG
HSPLLSVTTV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtcggctctctggacagggacagtgggctgacaatgggaatggggtcaaaggg
cgtgacctgtcccatctcagccaccgagagaagttgcagttccggggggacggctatgag
cagccaatcactatgcagattgaggggagacaccggcgagggagaaggcgtcatcactcc
cagtacccagtgtctgactgcggcacccagacggagcagcaatcctgggaggctctgagg
gccctaggggagggggagggggccgggcctggcctctgtgcctacgcttctggaccttac
tatgatcacatgacccttccaccagaactctatgcagccaatggatacctccccagtgtt
gcctacaatctggaggacattaacaggatagagtatgatgatgatccagagatgatgact
aaccagcccaataacaggaactgtctgattggctgctgtaacactgataatgatgagcca
agcagcttcctgagccagagtgaatatgagggccactggctggacaggcctctgaattac
ctgcctctccacgagcttgacagcggcctgggctgcaccgacggcagcctccaccagggg
gacctgtctgacccagagacagaggagggggtagaggcccctatgtcctctcctccagga
aacaccagccggggaagctctccctcctctgagtccctcctttcgtcagagctcagtgac
tctggcttccacagcgtcagcacaggggagttccgccacttccagaagattatagatggg
aggatccacaactaccggagtcgcgtcgtgccccgggaacagagatcaaagtctcgctgg
gacctggagtccatccctgagaccctgacctgtgacccccaggctggcagagccgcagac
ggagttcacacagccatgactcaccagtgcaccatgggtagtagctccattcagttccgc
aaagccaggagcccccagctgagcaggcatggcaccgggtttgctcctagggttgctgcc
tccagctgccgtacagaaccctgccagaggagagcattgatgctgaaccagcactcttct
gaggaccttcccagccgcagccacactgtgcatgacttatcagacaggagacgggccagc
cacccagccctgcccgctgggaacactgccacagggaaatacagacacgtaaaccgacaa
ccgcccagcagcccaaaccacctagccgtgcccactgagaactctggcacaggacaatac
aacagggggttcaacacagacatcagtgagaagaggagatgtccactgagtgaccatgtg
gaaggcacctggcaaggatgtgtggataaccacagaagcagtatggccagtgaggaatat
aacagtgagaaacagggtctttccaagagtccctcaaagaaacagcgtgggaaggagcca
gcagactggcgtcagtttgcgacactgggacatcctcacattggtggggactggccccaa
gcagactgtccctgcggtcccctctatagcacactggatggaccctctgcccgctccagg
aggggtctctctgggaatccccgggcggtgaggaaccagctcctgaaggcacgggcctcc
cggctggctgacgaacggagtgaggtcaccacggatgaggaggcccgcggggaggcctgg
gcaggccgctactggaacaggactgagcgccggcgccacctggcgtgggcccgggagcag
aggcagaggaagctgaaccgtggggctgagggggcaggggagaatgggactggaggtaca
ggggttgctgggggccttgggggtgcagggggtcctggaggaggctgcagcacagtgctg
gagctcagccacaggaagcagagtcgtctgaggaaccataaactgctggatgactggacc
acagtggaggagctgctgacccatgggacaagggtggggcagggggacaacattcacggt
cacagccctctattgtctgtcactactgtataa
DBGET
integrated database retrieval system
