Oncorhynchus tshawytscha (Chinook salmon): 112220838
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Entry
112220838 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112220838
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112220838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112220838
04121 Ubiquitin system [BR:
otw04121
]
112220838
03400 DNA repair and recombination proteins [BR:
otw03400
]
112220838
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112220838
Spliceosome [BR:
otw03041
]
Complex B
Other components
Prp19 complex
112220838
Complex C
Prp19-CDC5 complex
112220838
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
U-box type E3
112220838
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
112220838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Prp19
ANAPC4_WD40
NBCH_WD40
U-box
PROPPIN
eIF2A
Nup160
RMC1_N
Cytochrom_D1
Nucleoporin_N
zf-Nse
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
112220838
NCBI-ProteinID:
XP_024238514
LinkDB
All DBs
Position
LG21:complement(8455752..8461467)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGVDPMNSQPLSEEQLIDIKVSHP
IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQSMPASQLAAGGAGGEPMEVSVQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCI
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGQVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GLAFGDNAQFLSSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgcgcaatttccaatgaggtccccgagcacccttgcgtgtccccggtg
tctaaccaggtgttcgagcgccgactgatcgagaagtatattgcagagaatggagtggat
cccatgaatagccaaccactgtcggaagagcaacttatcgatataaaagtgtctcatcct
atccgaccaaaggctccctcttctaccagtatccctgccatactcaaggctctgcaagat
gagtgggatgcggtcatgttgcacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcattgctcgtctt
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtggcccctcagtctatgcccgcctctcagctagccgctgggggtgctggtggggaaccg
atggaggttagtgtgcaggtgggaatgactccagagatcatccagaagcttcaagataag
gctactgtccttaccacagagagaaagaagagaggaaagaccgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgccaagtggcttcccacgctggacttcacagtgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagacaccaacaaagtactcact
ggtggggctgataagaatgtggtggtatttgataagaaggaggagcagatcattgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtctgtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgtgactgggggcaactgtatc
caggtggtgcgagctcacgaggcgagtgtgaccgggctgtcacttcacgcaactggggac
taccttctcagctcttccgaagaccagtactgggccttctcggatatccaaactggccaa
gtccttaccaaagtcacagatgaggctgctggtgttgctctgacttgtgctcagttccac
cccgacggtctgatcttcgggacgggaaccgccgactcccagatcaagatttgggatctg
aaggagcgcacaaacgtggccaacttccctggccactctggccctgtcacctccatcgcc
ttctctgagaatggatactacctggctacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactatgaggttaag
tctctggtgtttgatcagagtggtacatacttggctgtgggtggatccgacatcagggtg
tacatctgcaagcagtggtcggaggtcctcaacttcagcgaccattctggcctggtgaca
gggctggcattcggagacaatgctcaattcctttcctccgctggaatggacagaagcctc
aagttctacagcctgtag
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