Oncorhynchus tshawytscha (Chinook salmon): 112220941
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Entry
112220941 CDS
T05605
Symbol
pcdh10b
Name
(RefSeq) protocadherin-10 isoform X1
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220941 (pcdh10b)
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112220941 (pcdh10b)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
112220941
NCBI-ProteinID:
XP_024238705
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All DBs
Position
LG21:complement(12039731..12058677)
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AA seq
1014 aa
AA seq
DB search
MIVLFLLLCIADGVVSQIRYSVPEEAGHGTFVGNIAEDLGLDMTKIASRRFQVVPSSRTP
YLEVNMENGILFINEKIDREQICKQSASCLLHLEVFLENPLELFRVEIEVVDINDNPPSF
PETDITVEISESAVPGTRFPLESAFDPDVGSNALRTYDITTNNYFYLDVQTQTDGNKFAE
LVLEKSLDREQQASHRYVLTAVDGGQPPRTGTALLVVKVLDSNDNVPVFDQPVYSVSLQE
NTPAGTLVIQLNATDLDEGQNGEIVYSFSNHISSRVKDLFAIDARTGRIEVRSEVDFEES
SLYQIFVQAKDLGPNAVAAHCKVLVKIMDVNDNAPDITFSTVTESVSERAAPGTVIALLS
VTDKDAEENGKIHVEILGDVPFKLKPSFRNYFTIVTDGPLNRENADSYSVTVVARDTGTP
SLATSKSIKVQVSDENDNAPTFTQPIYDVYVTENNVPGAYIHAVTALDPDVGQNALISYS
IMECDIQGMSVKTYVSINEETGYLYALRSFDYEQLKDFTFMVQAKDAGSPELFSNATVKV
IIVDQNDNPPSVIAPLGKNGTAREPLPRSAEPGYLVTRIIAMDADDGENARLSYSIQRGN
ENGMFRMDWRTGELRTARRVSTKRDPNQMYDLLIEVRDHGQPPLSSTASVFVVLVDSVVE
DHRERGTAKSKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNIYTCLTSDCC
LGCATCCSRHARARKKKLSKSDIMLVQSANVTGAGTAQVPVEESGSFGSHHQNQNYCYQV
CLTPESAKTDLMFLKPCSPSRSTDTEHNPCGAIVTGYTDQQPDIISNGSILSSETKHQRA
ELSYLVDRPRRVNSSAFQEADLVSSKDSGHGDSEQGDSDHDATNRGHSAGTDLFSNCTEE
CKALGHSDRCWMPSFVPSDGRQAADYRSNLHVPGMDSVPDTEVFESQEQTGDKSFSTFGK
ETPLSHHHQNHLHLSHHHATHANQAKLERKAFEALLSSTRAPYKPAYLTRKGVC
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgctattccttttgctgtgtatcgcggatggagtggtctcgcagatacgctac
tctgtgccggaggaggctggacacggcacgttcgtagggaatatcgccgaggacctggga
ctggacatgaccaaaatcgcttcacgccgcttccaggttgtgcccagctcgcggacgccg
tacctggaagtgaacatggagaacgggattctgttcatcaacgagaaaattgaccgggag
cagatctgcaagcagagtgccagctgtcttttacaccttgaagtgtttttggagaaccca
ctcgagctgttccgcgtggagatagaggtcgtggatatcaatgacaatccgcccagcttc
cccgaaacagacatcaccgtagagatctcggagagcgcagtccccggtacccggtttccc
ctagagagcgcattcgatccggacgtgggttccaatgcgctgcgcacatacgacatcacc
accaataactacttctacttggatgtgcagacgcagaccgacgggaacaaattcgcagaa
ctggtgctagagaagtcactggacagggagcagcaggcgtcccacaggtatgtgctgact
gcagtagacgggggccagccgccacggacaggcactgctctgctggtggtcaaagtgctg
gattctaacgacaacgtgcccgtgtttgaccagccagtgtactcagtgagtcttcaggag
aacacaccggcggggaccctcgttatccagctgaacgccacggacttagacgaggggcag
aatggggagatagtgtattcattcagtaaccacatctccagccgcgtcaaggacctgttc
gccatagacgcgcgcactggacgcatcgaggtgcgcagtgaggtggattttgaggagagc
agtttatatcaaatattcgttcaggcgaaagatctcggacccaatgccgtggccgcgcac
tgtaaagttctggtgaaaataatggacgtaaatgataatgctcctgatatcacattcagc
acagtgaccgagtcggtgagtgaaagggcagccccgggcaccgttatagccctgctgagc
gtgactgacaaagatgctgaggaaaacggaaagattcacgttgaaatcctcggtgacgtc
ccgttcaaactcaaaccttcctttaggaactatttcaccattgtaacagatggaccccta
aatagagagaatgctgactcatattcagtgactgtagttgccagggatacagggacccct
tcccttgccaccagtaaatcaatcaaagtgcaagtgtcggatgaaaatgacaatgcgcca
acgtttacgcagcccatatatgatgtgtatgtgactgaaaacaatgtgccaggtgcttat
atccacgctgtgaccgctctggacccagatgttggacagaacgctctcattagttactcc
ataatggagtgcgatattcagggtatgtctgtgaaaacatatgtgtcaatcaacgaagag
acgggctacctttacgcactcagatcattcgattacgagcagttaaaagacttcactttc
atggttcaggcgaaagatgcaggtagccctgagctcttctcgaacgccacggtcaaagta
atcatcgtggaccagaatgacaaccctccctccgttattgctcctcttggtaaaaatggc
actgctagagagcctctgccccgctccgccgagcctggctacctggtaacccgtatcatc
gccatggatgcagacgacggagagaacgcacggctctcctacagcatccagcgggggaac
gagaacggcatgttccgcatggactggaggacaggagaattgcgcactgcccggcgcgtc
tccaccaagcgggacccaaaccagatgtatgacctgttgatagaggtgagggaccacggc
cagccacccctctcctccaccgccagtgtgttcgtggtgctggtggacagtgtggtggag
gaccatcgggagagaggcaccgccaagtccaaggagacatcgctggacctcaccctcatc
ctcatcatcgccctgggctcagtctccttcatcttcctcctggctatgatcgtgctggcc
gtgcgctgccagaaggacaaaaagctcaacatctacacgtgcctcactagtgattgctgc
ctcgggtgcgccacatgctgcagcaggcatgcgcgagcccgcaagaaaaagctcagcaag
tccgatataatgctggtgcagagcgccaacgtcaccggggccggtacagctcaggtgcca
gtggaagagtccgggagcttcggctctcaccaccaaaaccagaactattgctaccaggta
tgtctgactccggagtcggccaaaaccgacctcatgttcctaaagccgtgtagcccatct
aggagcacagacacggaacacaacccgtgcggggccatagtgacagggtacactgaccag
cagcctgacatcatatcaaacggcagcattttatcaagcgagaccaaacaccagcgagcc
gagctcagttacctggtggacagacctcggcgtgtgaacagttcggctttccaagaagcg
gatctcgtaagctctaaagacagtggtcatggtgacagcgagcaaggcgacagtgaccat
gacgccaccaatcgaggtcactctgccggcactgatctcttctctaactgcactgaggag
tgcaaggcactgggacactccgaccgctgttggatgccctcctttgtgccctccgacggg
cgccaggcagcagactaccgcagcaacctgcacgtgccaggcatggactccgtgcccgac
actgaggtatttgaaagccaagagcaaacgggcgataagtcattctccacctttggcaaa
gagacccccctcagccaccaccaccaaaaccacctccacctcagccaccaccatgccacc
cacgccaaccaagccaagttagagaggaaagcgtttgaggcactactgtctagcacgcga
gcgccttacaaacctgcctatttgacgaggaaaggggtttgctag
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