KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112222533
Entry
112222533         CDS       T05605                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112222533 (mdc1)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112222533 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 BRCT FHA PTCB-BRCT
Other DBs
NCBI-GeneID: 112222533
NCBI-ProteinID: XP_042160333
LinkDB
Position
LG23:complement(16445158..16457424)
AA seq 2155 aa
MEATQLIDDSILEESEEEEDGEKRGEPLAKLRVLKNKHITETELPLYQGENVLGRNPDSC
SLPLVARSVSKQHTIISISMFRGNRRHGNVAAMETEALVWDLGSMNGTRKGRTKLTPHVR
YALTEGECVVIADIPCQYVSVDQRGGQGHMQNPTNAHSGRGRRSGPDRKAQLRGSPSGQG
LGRETGTPKTEGRGVNGEIGAPSLTELGGKGKNLAKPLSFEQTPTQPERTLVPESDSDGE
QEGRRDKWGKFFVSDSDSHMSSPTCSTFLSPTTKVIPESEDESPITPSSSAKNRPKKIVS
FSEEESDMDGPRQQPRRRRAQVIVDDSEEEEEGKEGTEALGEKETGKRTRGKEDVSVVNQ
VSQAERDRLTPSAPMVSTGDTFNMDSDTDVEGEEEMGLSAPVNAVKPPAATEPPTTDSDP
GQIHMDSDTDVEEGDTMDGDVKLMLTAADVERKPVDSVPVVQPTEIHLDSDTDVDDDDDV
SDSATNVTSFVSDPAEKPDDPAPAVPPVEFHLDTDTDVEEEDTDTHSKTVPESDSSGIRT
GIAGPQEILLDSDTDEEDSPFTPPASSRTAELLNPPTSVGPAAAAPLEIRSDSDTDLEED
STQTMNLPPPNVTTVTEDAVLASRQAVLPSPTITTTTGAVTKTIALRSQDSDADTDAEEE
RLEPKPRSRPPAGMVPESAPSRDGVGPQQGWSRCRPPAGMVPESDLSEPSDFRMDSDTEE
DGPGEAGQGQTACRLREGAVGPGLPPLGGSPGPHQKCSTPLASSVQEEMETQAFFCPSDP
FRRPALPPVLRPTAALSCSASDSQEDDDFVVAETQSFVLEAQNQGHQSSLPVEPTLDATQ
PYGLEPSLGEDREEQPSRGSSQLGLSDSSHLQARDQASESTQAFSFPGGDSDLEATQTYG
SGGGREEPGLGQRSAVFGRNRQVDFVLEATQAYAAQPRSDTEEEDEEETPNVATTETLPM
SAYEEEDGEEEEDLVGAMPLTPVRRGRSGGAREREEEEQETQTGEVLTNQYLSTAQTLDT
VQESDDEEEAKPDSPRRRRTQKQTVDEEERQTVGSYLSTAETQPMFTAVAAEDDDDNEEE
ELKPPSPRRRGRSQRGRVEEEETQPSEFLTSSHISTAETQPMGTCDTEEEEEEDTKAKGR
AQRERGKESEAGTSGVSSRGRRGARGGEEESSETLKTQMRGKGKAVNTAGGGGRREVLPE
EEESEKEEEAEVVEQGRRGRGRKSVKQQKEGEKERLEEEGIEKERQEQPEKERLQKGKVE
SERVMKEQQDRERMEQELKEQDERLESVEREETERIEREKREETERMERRMEREKTEQEK
TEQEKTEQEKTEQEKTEQEKRERLERERKEREEQERLQCERTKREKKERLEEEKERIERE
RKEIEERNRLEREEKGKQEQLERERVEKERIEGEQAEKQRSEKEKMEREEKRKQERELLK
KKKEEKERNLKEKLEREKKEREKREVEEKEKEIKERQAKEQGEKQAKKDDENELKTSRRG
RRATTRRTVTVPPTTEPQPELNILSSTPEPVPASITRSRSNSSNSVSSERSSIDTLGSRG
RGGRKTTSTTEPAPGPDNPTRNSTRRRTLVGTVVAPPAAVEVTVQDILSSEQFVARRTRS
SSTNSHSSTNSEVSTCIVDSVSSQSKGRGGGRRRKTGTESVSPSNRQSEQPPAHKPTARG
RRSQKVEDDSPHPVINEKADSQEAGGTIRGQNKTAKTNEPDPVVADEETTPAQVTEDSPA
PRGNGRGRGRAGQKDNTPESTTTTLGGDTPSEEGVESKTGGRGKGRKRGLEEEEENSGFK
VPRRKAKVQRGGRCRAVEEEGEKEEKPASTPAKRGRASTAQVKKIAEEEKSMERQSEKME
EEEAGAVQRKVRGRQLTVQIKKKEEPVLDSVVPQTPTGKGRGKRRAPVESSPLARTPRSS
SASPLSSLSSPGTLGPARAATQSYKVLFTGVVDEEGGKVVSCLGGSLAKGVADMTHLVTD
RVRRTVKFLCAVARGVPVVTTDWLDKCGKVGRFLPTDRYLVKDREQENKFSFCLEESLRT
ASTQPLLQGYEVHVTGSVLPEPAQMKDIIVCSGARFLSTMPSTQKAQARTLVISCGEDWS
LCAPARSASLHVLSAEFLLTGILQQRVDLVTHVLSAPKPRAQPGAKGQARGRKIM
NT seq 6468 nt   +upstreamnt  +downstreamnt
atggaggcaacacagctgatcgatgactcaatattggaagagtcagaggaggaggaggat
ggagagaagcgaggagagccactggccaaactcagggtgttaaaaaataaacacatcaca
gagactgagttgcctctctaccagggagaaaatgtgttaggtcgaaacccagactcctgc
tccctgccccttgtggcccgctccgtatccaagcaacacaccatcatctccatctcaatg
tttcgcggcaaccgtcgtcacggcaacgttgccgccatggagacagaggctttagtgtgg
gacctgggcagcatgaacgggacaaggaagggccggaccaaactgacccctcacgtccgc
tacgctctgaccgagggagagtgtgtggtaatagctgacatcccctgccagtatgtctct
gtggaccagagggggggacaggggcacatgcagaacccgacaaacgcacactctggaagg
ggaaggaggtcagggccagacaggaaggcccagctcagaggaagccctagcggccaaggt
ctgggacgagagactggcacaccgaagactgagggtagaggagttaatggagagattggg
gcaccatcgttaactgagctgggtggaaagggtaaaaatctggccaaacccctgtcattt
gaacaaacccccacacagcctgagaggacactggtgcctgagtctgactccgatggagag
caagaggggcggagagacaaatggggaaagttctttgtctctgattctgactcacacatg
tccagtcccacctgttctacattcctcagtcctacaaccaaagtcattccagagagtgag
gacgagagccccatcactccctcctcctctgctaaaaacagacccaagaaaatagtgagc
ttcagtgaggaggagagcgacatggatggaccgagacagcagcccaggagaagaagagct
caagtgatagtggacgacagcgaagaagaggaggaggggaaggaaggcacagaggcacta
ggagagaaggaaactggcaaaaggacaagaggaaaggaggatgtgtcagtggtgaaccag
gtcagtcaagctgagagagatcgattaaccccctctgcaccaatggtgtctacaggggac
acgtttaacatggacagtgacacagacgtagagggagaggaggagatggggctgtctgca
cctgtaaatgctgttaagccaccagccgcaacagaacctcctactacagactctgaccca
ggccagatccacatggacagtgatactgatgtagaggaaggggatactatggacggtgac
gttaagttaatgctaactgctgccgatgtggagaggaaaccagtagattctgtcccagtg
gtgcagccaacagagatacacctggacagtgatacagatgtggatgatgatgatgatgtg
tcagacagtgctaccaatgttacctccttcgtatccgatccggctgagaaaccagacgat
cctgcccctgcagtaccacccgtagaattccacctagacactgacacagatgtggaagag
gaggacacagacacacattccaaaacagttccagaatcagattctagtgggatcagaaca
gggattgctggtccccaggagatcctattggacagtgatactgatgaagaagacagcccg
tttacccctccggctagcagcagaacagcggagctccttaatccacccaccagtgtagga
cctgcagctgctgctcctctggagatcaggtctgacagcgacactgacttagaggaagac
tccacacagaccatgaaccttcctcctcctaatgtcaccacggtaacggaggatgcggtg
ttagcgtcgcgacaggccgtgcttccatcacccacaattacaacaacaaccggtgctgtt
accaagacaatcgctctcaggtctcaggactctgatgctgacacagatgctgaggaggag
aggttggagcccaaaccccggagtcggcccccagcagggatggtcccggagtcggccccc
agtagggatggtgtcggcccccagcagggatggtcccggtgtcggcccccagcagggatg
gtcccggagtcggacctcagtgagcccagtgacttcaggatggacagcgatacagaagag
gatggaccaggagaggcaggccagggacagactgcatgtcggctcagagagggggcagtt
ggccctgggctgccccccctggggggttcccctggccctcatcagaagtgctccacccct
ttggcatcgtcagtacaggaggagatggagactcaggccttcttctgtccctctgacccc
ttcagacgcccagctctccctcctgtgctgaggcctacagcagcattgtcctgctctgca
tcagacagccaggaggacgatgactttgtggtggccgagacccagtcatttgtgttggag
gcccagaaccagggccatcagagcagccttccagtggaaccaaccctggatgctacgcag
ccctacggtttggagccttccttgggggaggaccgggaggagcagcccagccgaggctcc
tcccagctgggtctgtcagacagcagccacctccaggccagggaccaggcctcagagagc
acccaggcattcagcttcccaggtggggattctgacctggaggccacccagacctatgga
tctggaggggggagagaggagcctggcctgggccagaggtctgcggtgttcgggaggaac
aggcaggtggactttgtcctggaggcaacacaggcttatgctgcccagcctcgcagtgac
acagaggaggaagatgaagaggagacccccaatgttgctacgactgaaaccctgcccatg
tctgcctatgaggaagaggacggtgaggaggaggaagatttggttggggccatgcccctg
accccagtaaggagagggagatctggaggagcaagggagagagaggaagaggagcaggag
acccagactggtgaggttctgaccaaccaatacctctccacagctcaaactctggacacg
gtccaggagagtgatgatgaggaagaagccaaaccagactcgcccagaagaagacggacc
caaaaacagacagtagacgaggaagagagacagactgtcggctcctacctctccactgct
gaaacccagcccatgtttactgctgttgctgctgaggatgatgatgataatgaggaggaa
gaactcaaacctccatcacccagaaggaggggaaggtcccagagagggagagtagaagag
gaggagacacaacctagtgagttcctcaccagctcccacatctccaccgctgaaactcag
cctatgggtacttgtgacactgaggaagaggaggaggaggacaccaaagctaaaggacgg
gctcagagagagcgagggaaagagtctgaggctgggacaagcggagtcagcagtagaggt
agaagaggagctagaggaggagaggaggagagctctgagactctgaaaacgcagatgaga
gggaaggggaaggctgtgaacaccgcaggaggcggagggaggagagaggtgttgcctgag
gaggaagagagtgagaaagaagaagaggcggaggtggttgagcaagggaggaggggaaga
ggaagaaagagtgtgaaacaacagaaagagggagaaaaagaaagacttgaggaagaggga
atagagaaggaaagacaagaacagcctgagaaggaacggttgcagaagggaaaagtagaa
tcagaaagggttatgaaggaacaacaggacagagagaggatggaacaggaacttaaagaa
caagatgagagattagagagtgtggaaagagaagaaacagaaaggatagagagggagaaa
agagaagaaacagaaaggatggagagaaggatggagagggagaaaacagaacaggagaaa
acagaacaggagaaaacagaacaggagaaaacagaacaggagaaaacagaacaggagaaa
agagagcggcttgagagggaaaggaaggaacgagaagagcaagaaagactgcagtgcgag
aggacaaaaagagaaaagaaggagagattagaggaagaaaaagaaagaatagagcgggag
aggaaagaaatagaagagaggaacagactggagagggaggaaaaagggaagcaagaacaa
ttggagagagaaagggtggagaaagagaggatagagggagaacaagcagaaaagcaaaga
tcggagaaagaaaaaatggaaagggaagagaagagaaaacaggagagagaactattgaag
aagaaaaaggaagagaaggagagaaacctgaaagaaaaactggagagggagaagaaggaa
agagaaaagagggaagtcgaggagaaagaaaaggagataaaagaacgacaggcgaaggaa
caaggagaaaaacaagccaagaaagacgacgaaaatgagctaaaaacatccaggagaggt
cgcagagcaacaaccaggagaaccgtcacggttccacccacaacggaaccacaacctgaa
cttaatattctgtccagcacaccagaaccagtcccagctagtataactaggtctcgctcc
aactcttccaactctgtcagctctgagagatccagcatagacaccctggggagcagaggg
agagggggcaggaagaccaccagcaccacagagccagccccgggtccagacaaccccacc
cgcaacagcaccaggagaaggacgttggtcgggacggttgtggctccccctgctgctgtg
gaggtcacagtgcaggacattctctccagcgaacagtttgttgccaggagaacccgctct
agctccaccaactcccacagctccaccaactcggaggtctccacctgtatcgtggatagc
gtgagctctcagagcaaagggaggggaggaggcagaaggaggaagactggaacagagtct
gtctcccccagtaacaggcagagtgagcagcctccagcccacaagcccacagccagaggc
aggagaagccagaaggttgaggatgatagtccacaccctgttattaatgagaaggctgat
tctcaggaggctggtggtaccattagagggcagaataaaactgccaaaaccaatgagcca
gaccctgtagtagcagatgaagaaaccactccagcccaggtaacagaggactcccccgct
cctagagggaatggaagaggccggggccgagccggccagaaagacaacacacctgaatcc
accactacaacattaggaggggacactccaagtgaagagggagtggagtctaaaacaggt
gggagagggaaagggaggaagagggggctggaagaggaggaggagaacagtgggttcaag
gttccccggaggaaagctaaggttcagaggggagggagatgcagggctgtagaggaggaa
ggagagaaagaggagaaacctgcatccactccagcaaagaggggcagagcctccactgca
caggtgaaaaagatagcagaggaggagaagagtatggagagacagagtgagaagatggaa
gaggaagaggctggtgctgtgcagaggaaagtccgaggcaggcagttgacggttcagata
aagaaaaaagaggaacctgttttggactctgtggtgccccagacccctacaggtaagggt
agaggtaaacgtagggcccctgtggaatcatcaccactagccaggacccctcgctcctcc
tctgcctctcccctgtcctccctctcctcccctgggacactgggcccagcaagggccgcc
acacagtcctacaaggtgttgtttacaggagtggtggatgaggagggggggaaggtggtg
tcttgtctggggggcagcctggcgaagggcgtggctgacatgacccacctggtgactgac
cgggtccgacgcaccgtcaagttcctgtgtgctgtggcccgcggcgtgcccgtcgtcacc
accgattggctggataagtgtggtaaggtgggtcgtttcctacctactgacaggtacctg
gtgaaggatagggagcaggagaacaagttcagcttctgtctggaggaatcactgaggacc
gccagcacccaacctctactacagggctatgaggtccatgtgaccgggtcagtgttacca
gagccagcccagatgaaggacatcatcgtctgtagcggagctcgcttcctctccacgatg
ccctccactcagaaggcccaggcccggaccctagtgatatcgtgtggggaggactggtct
ctctgtgctcctgctcgctctgcttctctccacgtcctcagtgctgagttcctgctaact
ggtatattacagcagagagtggacctggtaacccatgtcctctcagcccccaaacccagg
gcccagccaggagccaaaggccaggccagggggaggaagataatgtaa

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