Oncorhynchus tshawytscha (Chinook salmon): 112229415
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Entry
112229415 CDS
T05605
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112229415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112229415
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112229415
Complex C
U5 SnRNP specific factors
112229415
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
112229415
NCBI-ProteinID:
XP_024251006
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All DBs
Position
LG31:30880992..30892638
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AA seq
348 aa
AA seq
DB search
MIEPKKRPADMAVVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgattgagccaaagaagagaccggcggacatggcggtggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgttgatgtgcggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcagtccatacg
ttccagaacacctaccaggtattggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggagattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgctgcaggctcagctgacaggtttgtg
tatgtgtgggacaccacctctcgtaggatcctgtacaagctgccaggccacgctgggtcc
gtcaacgaggttgccttccatcccgaggagcccattgtcctctctggcgcaagtgacaag
agactctacatgggagagattcagtag
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