Oncorhynchus tshawytscha (Chinook salmon): 112230844
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Entry
112230844 CDS
T05605
Name
(RefSeq) versican core protein isoform X1
KO
K06794
neurocan core protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112230844
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112230844
04091 Lectins [BR:
otw04091
]
112230844
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
112230844
Glycosaminoglycan binding proteins [BR:
otw00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
112230844
Lectins [BR:
otw04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
112230844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
EGF
hEGF
Lectin_C
V-set
EGF_CA
EGF_3
I-set
Motif
Other DBs
NCBI-GeneID:
112230844
NCBI-ProteinID:
XP_042166938
LinkDB
All DBs
Position
LG33:8777068..8810151
Genome browser
AA seq
2494 aa
AA seq
DB search
MDIRTQGFVEMLHLRHLLCLVFLCRAFAEQDPSWRMKVEKAAPASGSLAGRVVLPCHFSI
TPTTHNPSTQGPEDQLRIKWTKLEEDGESVVLVAQGGVIKVEQEYKGRVSVPNHPQALGD
ASLIVARLRASDAGLYRCEVMHEMEDTQDTVHLNVSGVVFHYRSASSRYTFSFPGAVGAC
RAAGATIATAEQLTAAFEDGLDQCDAGWMADQTVRYPITKPRPGCMGDMMHRPGIRTYGL
RDPKETYDVYCYADQLHGEVFYAPIRYKLTLRQAKRACETQGAVLASPGNLFAAWRGGLD
RCDYGWLSDGSARYPISVPRPQCGGGLLGVRTLYRFPNQTGFPKPIDRHGAFCFKGKEPE
IPPPGPVTTTDARRTDTATDEPRTTYHAGGPNLTGSTPADRADRTAADKPHQTTGQDRSE
HTGGPHDTAYTGTVRHYTATDGTHTAKDEHRTTDRETTGKDRTTQVGDRTTDQKTDFSVG
TTQFPEYDGEDFVPDLTKVESLPPMGDPLLPLQLPPLPTIRSQPTRPQLDINQGGDKEEG
EVQTGSGRGESSGSGEGSSSDGESEGDDRGVMTPTQGFTAVTGLGSDPSRPGQPGYPGHP
KGYPGLVTPEHGPSGGDKVTGQQPAVVYKEEEGKSSRTTTHSQPGATESYGMDKSVATHE
EASPTKPPIHLIIVDVHDRNQSVDHILQILGHPLGGNGDFQSPLIPAFPVTQSEAIRGSE
DSDGMHPIPFPPTLSFINGKHQQEARGDQFEMATPVYGELGGEMEQGEEKSPTPFDYDSI
HTGETSQSTATDTDGDTNRHTEEDTDRGTGRDRTGKTESSNGTTPNSQHTSPVSSPVSAS
SSGSPHTSPDGVSPDEDMEGSGGRTQEGSAEDTRPTPASDSQSGVVTDETEIGGAESVTH
APSHTHSAHTKDTNTIDTYTKDTHTPSHAHSTRTKDTNTIDTDTKDTHTTSQTEAGDFEG
SSSAEEEGSAQEVYPPEDPRYTSPGGPGAIEAPPVGPGVEGQVTVTPKPEVRPGTMPTQA
GETVGHHPGHHTDSSTQHRDHSRQPATQEKDLSTHTKAQTRHPSSDGKDQTNQHNTHDSN
HSTDTQDGSMYPPTQTTQHPTHVRDPTKNQTTYHRDHSTHTKDQTEQPSHPRFPPTHHKN
QTSHSTTDQKTPQHLNQTHTPPAHTSTPPPSRPIHDWAQTPQTPQTPRPEGEEFVDYDRA
IGPPLLEAGPHAPKEPQTTYQPETGTDYYIVDQTVDVRGLQQCTVNVCLNKASCYQRGRA
SICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSFTCLCLPSYTGGLCEQGTRPGT
RPGTMPTLAGETVGDHPGHHTDSSTQHRDHSRQPATQEKDLSTHTKAQTRHPSTDGKDQT
NQHNTHDSNHSTDTQDGSMYPPTQTTQHPTHVRDPTKNQTTYHRDHSTHTKDQTEQPSHP
RFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHTSTPPPSRPIHDWAQTPRPEGEEFVDY
DRAIGPPLLEAGPHAPKEPQTTYQPETGTDYYIVDQTVDVRGLQQCTVNVCLNKASCYQR
GRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSFTCLCLPSYTGGLCEQGTR
PGTRPGTRPGTRPGTMPTLAGETVGDHPGHHTDSSTQHRDHSRQPATQEKDLSTHTKAQT
RHPSTDGKDQTNQHNTHDSNHSTDTQDGSMYPPTQTTQHPTHVRDPTKNQTTYHRDHSTH
TKDQTEQPSHPRFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHPSTPPPSRPIPDWAQT
PRPEGEEFVDYDRAIGPPLLEAGPHAPKEPQTTYQPETGTDYYIVDQTVDVRGLQQCTVN
VCLNKASCYQRGRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSFTCLCLPS
YTGGLCEQGTRPGTRPGTRPGTRPGTMPTLAGETVGDHPGHHTDSSTQHRDHSRQPATQE
KDLSTHTKAQTRHPSTDGKDQTNQHNTHDSNHSTDTQDGSMYPPTQTTQHPTHVRDPTKN
QTTYHRDHSTHTKDQTEQPSHPRFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHTSTPP
PSRPIHDWAQTPRPEGEEFVDYDRAIGPPLLEAGPHAPKEPQTTYQPETGTDYYIVDQTV
DVRGLQQCTVNVCLNKASCYQRGRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDG
VNSFTCLCLPSYTGGLCEQDTEVCEYGWQKFQSQCYKHITHRRTWDTAERECRLHGAHLV
SVLSQEEQLYVNGLGHDYQWIGLNDKMFERDFRWTDGSIMQYEHWRPNQPDSFFQSGEDC
VVMIWHEGGQWNDVPCNYHLTFTCKKGTVSCSQPPVVKDARVFGFMKPRYEINTLIRYHC
KNGFIQRYPPTIRCRDNGQWDSPKITCMSPATYQKSFASRKHTDNHNHNQNQYNHNNHNQ
FNYQNQQYNSQNNQDQQKTNNQKQKQQSERRHQH
NT seq
7485 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaggacccaaggttttgtagagatgttgcatctcaggcacctgctctgtctg
gtgtttctttgtcgtgcgttcgctgaacaagatccatcatggaggatgaaggtagagaag
gctgcccccgctagtggctctctggctggcagggtggtgctaccatgccacttctccatc
acccccaccacccacaaccctagcacacagggcccagaggaccagctgaggatcaagtgg
acaaagctggaggaagatggggagagtgtggtgctggtggcccagggaggagtgatcaag
gtggagcaggagtacaagggcagggtgtcggtgcccaaccacccccaggcattaggcgac
gcctcactgatcgttgcccgcctgagggctagcgacgctgggctgtaccgctgcgaggtc
atgcatgagatggaggacacccaggatactgttcatctcaatgtcagcggtgtggtgttc
cactacaggtctgcttctagccgctataccttttcctttcccggggccgttggcgcgtgt
cgcgcggccggggcaaccatcgctacggccgaacagctgactgccgccttcgaggacgga
ctggaccaatgtgacgccggctggatggccgaccagacagtcagatacccaatcacgaag
ccccgtcctggttgcatgggcgatatgatgcacaggcctgggatcaggacgtatgggctc
agagaccctaaagagacctacgacgtctactgttacgcagaccaactacacggtgaggtg
ttctatgctcctatccgttacaagctgacccttcgccaggctaagcgcgcgtgcgagacg
cagggggcggtgctcgcctcccctggcaacctgttcgccgcgtggcgcggaggcctggat
cgctgtgactacggctggctgtcagacgggagcgcccgctaccccatctcggtccccagg
ccccagtgtggaggagggctgctgggggtccggactctgtaccgattccccaaccagact
ggcttccccaaacctattgacagacatggagcgttctgcttcaagggtaaggaaccagag
atcccccctcctggacctgtgacgaccacggatgctcgcaggacagacacggccacagat
gaacctcgcactacctaccacgcaggcggaccaaaccttacaggctcaactcccgcagac
agagctgaccgcacagctgcagacaaaccacaccaaacaactggccaagacagaagtgag
catacaggtggaccacacgataccgcttatacaggcacagtccgacattacactgccact
gacggaacacacaccgccaaagacgagcatcgcaccactgaccgcgagacgacaggcaaa
gacagaactacccaggtaggagacagaacgacagaccaaaagacagacttctctgttggt
accactcagttccctgagtacgatggggaggactttgtcccagacctaaccaaggtagag
tcattgccccccatgggtgatcccctgctccccctgcagctgccccctctccccaccatc
cgttcccagcccacccgcccccaactagacatcaaccaggggggagacaaggaagagggg
gaggttcagacaggctcaggcaggggggagagcagtgggagtggggaggggagcagtagt
gatggggagagtgagggggatgaccggggagtgatgactcccacacagggcttcacggca
gtcacaggactggggtcggacccctcacgcccaggacaaccagggtacccaggacatcca
aaggggtatccagggttggtcaccccagagcatggcccatcaggtggggacaaagtgaca
ggacagcagcctgctgtggtctacaaggaggaggagggcaagagctctagaacaacaacc
cacagccaaccaggagccacggaatcatacggcatggacaaatcggtggctacccatgag
gaggcctcgcccaccaaaccaccaatccacctcatcatcgtcgacgtgcacgaccggaac
caatcagtggaccacatcctgcagattctgggacaccctttagggggtaatggagatttc
cagtcccctctcatcccagccttcccagttacccagagtgaggccattcgcggcagtgag
gactctgacggcatgcatcccatcccttttcccccaacgctcagcttcatcaacgggaaa
caccagcaggaggctagaggagaccagtttgagatggccacaccagtctatggtgaactg
ggaggagagatggagcaaggagaggagaaaagccccactccctttgactatgactccatc
catactggagagaccagccagtccactgctacagacacagacggagatacaaacagacac
acagaggaagacacggacagaggcacaggcagagacaggacaggaaagacggagagctcc
aatggaacaacccctaattcccaacacacatccccagtctcttcaccagtctcagcctca
tcctctggttccccccatacttccccagatggcgtctcgcctgacgaggacatggaaggg
tcaggcggccgtacccaggagggctcagcagaagacacccgacccacccccgcctcagac
agccaatcaggcgtggtcacagacgagacggagattggaggggcggagagtgtcacacac
gccccgtctcatacacactctgctcacactaaggacacaaacactattgatacttacacc
aaggacacacacactccatcgcacgcacactctactcgcactaaggacacaaacactatt
gatactgacaccaaggacacacacactacatcacagacagaggcaggagacttcgagggg
tcttcatcggcagaagaggaaggctcggcacaggaggtgtacccacctgaagaccccaga
tacactagccccggcggtcctggagccatcgaagctcccccggtggggcctggggttgag
ggacaggtgactgttacacccaaaccagaagtcagaccaggaaccatgccaacccaggca
ggagagactgtaggacaccaccctggacatcacacagactcttctacacagcacagagac
cactcccgccaacctgccacacaggagaaagatctctccactcatactaaagctcagacc
agacacccctcttcagatgggaaggaccaaaccaatcagcataacacacacgatagcaat
cactccacagacactcaggatggatccatgtaccctcctacacaaaccacccagcatcca
acacacgttagggatcccaccaagaaccagaccacataccatagagatcactccacccac
actaaggaccaaacagaacagccctctcaccctagattcccccccacccaccataagaac
caaaccagtcactctactacagatcagaagaccccacagcacctgaaccaaacacacaca
ccccctgcacacacctccactccacctccctcccgccccatccacgactgggcccagacc
ccccagaccccccagaccccccggcctgagggagaggagtttgtggattatgaccgggcg
attggtcctcctctgctggaggccggcccccatgctcctaaagaacctcagaccacatac
caacctgaaacaggaactgactactacatcgtggaccagactgtcgatgtcagaggactg
cagcagtgcacagtgaatgtgtgtttgaacaaagcatcctgctaccagagaggcagagcc
agcatctgtgtgtgtccaactggatacactggacagcgctgcgagacagatgttgatgaa
tgccagtccaacccatgtcgtaatggagccacctgtatggacggagtcaactccttcacc
tgtttgtgtctacccagctacacaggagggctctgtgaacaaggaacaagaccaggaacc
agacctggaaccatgccaaccctggcaggagagactgtaggagaccaccctggacatcac
acagactcttctacgcagcacagagaccactcccgccaacctgccacacaggagaaagat
ctctccactcatactaaagctcagaccagacacccctctacagatgggaaggaccaaacc
aatcagcataacacacacgatagcaatcactccacagacactcaggatggatccatgtac
cctcctacacaaaccacccagcatccaacacacgttagggatcccaccaagaaccagacc
acataccatagagatcactccacccacactaaggaccaaacagaacagccctctcaccct
agattcccccccacccaccataagaaccaaaccagtcactctactacagatcagaagacc
ccacagcacctgaaccaaacacacacaccccctgcacacacctccactccacctccctcc
cgccccatccacgactgggcccagaccccccggcctgagggagaggagtttgtggattat
gaccgggcgattggtcctcctctgctggaggccggcccccatgctcctaaagaacctcag
accacataccaacctgaaacaggaactgactactacatcgtggaccagactgtcgatgtc
agaggactgcagcagtgcacagtgaatgtgtgtttgaacaaagcgtcctgctaccagaga
ggcagagccagcatctgtgtgtgtccaactggatacactggacagcgctgcgagacagat
gttgatgaatgccagtccaacccatgtcgtaatggagccacctgtatggacggagtcaac
tccttcacctgtttgtgtctacccagctacacaggagggctctgtgaacaaggaacaaga
ccaggaaccagacctggaacaagaccaggaaccagaccaggaaccatgccaaccctggca
ggagagactgtaggagaccaccctggacatcacacagactcttctacacagcacagagac
cactcccgccaacctgccacacaggagaaagatctctccactcatactaaagctcagacc
agacacccctctacagatgggaaggaccaaaccaatcagcataacacacacgatagcaat
cactccacagacactcaggatggatccatgtaccctcctacacaaaccacccagcatcca
acacacgttagggatcccaccaagaaccagaccacataccatagagatcactccacccac
actaaggaccaaacagaacagccctctcaccctagattcccccccacccaccataagaac
caaaccagtcactctaccacagatcagaagaccccacagcacctgaaccaaacacacaca
ccccctgcacacccctccactccacctccctcccgccccatccccgactgggcccagacc
ccccggcctgagggggaggagtttgtggattatgaccgggcgattggtcctcctctgctg
gaggccggcccccatgctcctaaagaacctcagaccacataccaacctgaaacaggaact
gactactacatcgtggaccagactgtcgatgtcagaggactgcagcagtgcacagtgaat
gtgtgtttgaacaaagcgtcctgctaccagagaggcagagccagcatctgtgtgtgtcca
actggatacactggacagcgctgcgagacagatgttgatgaatgccagtccaacccatgt
cgtaatggagccacctgtatggacggagtcaactccttcacctgtttgtgtctacccagc
tacacaggagggctctgtgaacaaggaacaagaccaggaaccagacctggaacaagacca
ggaaccagaccaggaaccatgccaaccctggcaggagagactgtaggagaccaccctgga
catcacacagactcttctacacagcacagagaccactcccgccaacctgccacacaggag
aaagatctctccactcatactaaagctcagaccagacacccctctacagatgggaaggac
caaaccaatcagcataacacacacgatagcaatcactccacagacactcaggatggatcc
atgtaccctcctacacaaaccacccagcatccaacacacgttagggatcccaccaagaac
cagaccacataccatagagatcactccacccacactaaggaccaaacagaacagccctct
caccctagattcccccccacccaccataagaaccaaaccagtcactctaccacagatcag
aagaccccacagcacctgaaccaaacacacacaccccctgcacacacctccactccacct
ccctcccgccccatccacgactgggcccagaccccccggcctgagggggaggagtttgtg
gattatgaccgggcgattggtcctcctctgctggaggccggcccccatgctcctaaagaa
cctcagaccacataccaacctgaaacaggaactgactactacatcgtggaccagactgtc
gatgtcagaggactgcagcagtgcacagtgaatgtgtgtttgaacaaagcgtcctgctac
cagagaggcagagccagcatctgtgtgtgtccaactggatacactggacagcgctgcgag
acagatgttgatgaatgccagtccaacccatgtcgtaatggagccacctgtatggacgga
gtcaactccttcacctgtttgtgtctacccagctacacaggagggctctgtgaacaagac
acggaggtgtgtgagtatggctggcagaagttccagagccagtgttataagcacatcacc
caccgtcgcacctgggacactgccgagagggagtgccgtctccacggagcccacctcgtc
agtgtcctgtcacaggaggagcagctgtatgtcaacggtctgggccatgactaccagtgg
atcggtctaaacgacaagatgtttgagagagacttccgctggactgacggcagcatcatg
caatatgagcactggcgtcccaaccagccagacagtttcttccagtctggagaggactgt
gtggtgatgatctggcacgagggaggacagtggaatgacgtaccctgcaactaccacctc
accttcacctgcaagaagggcacagtctcttgcagccagccaccagtagtgaaggatgct
cgtgtgtttggttttatgaagcctcgttatgagatcaacactctgattcgttaccactgt
aaaaacggcttcatacagagatacccccccaccatccgctgccgtgacaacggccaatgg
gacagccccaagatcacctgcatgagccccgctacctaccagaagtctttcgcttctagg
aaacacaccgacaatcacaatcataaccagaatcagtacaatcacaataatcacaaccag
ttcaactatcaaaaccaacaatacaacagccaaaacaatcaagaccaacagaagaccaac
aaccaaaagcaaaaacagcagagcgagaggagacatcaacactaa
DBGET
integrated database retrieval system
