Oncorhynchus tshawytscha (Chinook salmon): 112245994
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Entry
112245994 CDS
T05605
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112245994
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112245994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112245994
NCBI-ProteinID:
XP_024270021
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Position
LG03:complement(67565963..67567984)
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNSGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLTGGLLSGAGGGGMGLGVGVGSSGVGQRLESPGCHGGSASSGYTHMNGWANGAYSGQV
AAAAAAAAMMQEAQLVYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSQGY
MSASPSGYGGITYTQHQSSGVSSSAAMSTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHALPQHYQSATAAVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccattcccctggaccccaaacgaacacaaat
tcggggcagacgggaccgaacagcgggtccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcccaggagaacccc
aaaatgcacaactccgagatcagcaagcggctgggcgcggagtggaaggtgatgaccgaa
gcggagaagagacccttcatcgatgaagcgaagcggttacgagccatgcatatgaaggag
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctgaccggtggcctgctctctggggccggcggcggtggaatgggtctgggggtc
ggggtgggttcatctggggtcggccagaggttagagagccccggatgccacgggggctcc
gccagctcaggctacacgcacatgaacggctgggcgaacggtgcgtactcggggcaagtg
gctgcagcagctgcggccgcggcgatgatgcaggaggcgcagctagtttacagccagcac
ccgggcagcgggcaccaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcgctccagtacagccccatctcgaactctcagggctac
atgagcgcctctccgtccggctacggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctccgctgccatgagcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgacaggagagcccggggacccgtcggtgcaaagtagactccacgca
ttgccgcagcattaccagagtgcgacggctgcggtgaacggaaccgttccgttaacacat
atatag
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