Oncorhynchus tshawytscha (Chinook salmon): 112257089
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Entry
112257089 CDS
T05605
Name
(RefSeq) homeobox protein CDX-1-like isoform X1
KO
K09312
homeobox protein CDX1/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112257089
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
112257089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caudal_act
Homeodomain
Homeobox_KN
O-antigen_lig
Motif
Other DBs
NCBI-GeneID:
112257089
NCBI-ProteinID:
XP_024286429
LinkDB
All DBs
Position
LG08:complement(60209861..60213488)
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AA seq
274 aa
AA seq
DB search
MYVGYLLDKEGSMYHQGPVRRSGINIPPQNFVSTPQYSDFTGYHHVPNMDTHTQSSGAWG
APYVAPREDWGAYSLGPPNTIPTPMNNSSPGQVSYCSPEYNPMHAPGSAVLQPPTDNISV
AQLSPDRERRNSSYQWMNKTVQSSSTGEKGKTRTKEKYRVVYTDHQRLELEKEFHFNRYI
TIRRKSELAGNLGLSERQVKIWFQNRRAKERKLIKKKLGSDGSGGSVHSDPGSVSPLPVP
GSLSPSDIHGSLYPPPGMNNLPSIRNIQQVTVTQ
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgggatacctcttggataaagaaggcagcatgtatcaccaaggacctgtaaga
cgatcgggaatcaacatcccaccacagaactttgtttccacgccacaatattccgacttt
actggataccatcatgtgccaaacatggatactcatacacagtcttcgggggcttgggga
gctccttatgtcgcaccgagggaggactggggcgcctatagtctggggcctcctaacact
attcctacgcccatgaacaactcctcgccgggacaagtttcctattgctcacctgaatac
aatcccatgcacgcgccagggtcagcagtattgcaaccacctacagataatatttctgtt
gctcaactttccccggatagagaaaggcgcaattcttcttaccagtggatgaacaaaacg
gtacaatcgtcatctacgggtgagaaaggcaaaacaagaacgaaggagaaatacagagtg
gtttacaccgatcaccagagactggagctggagaaggagttccattttaatcgttacatc
actatccgaagaaagtccgaacttgcggggaatcttggcctttcagaacgacaggtgaag
atctggtttcaaaatcgcagagccaaggagaggaaattaatcaaaaagaaattggggtct
gatggcagtggaggatcagtgcacagtgacccgggttcagtgagtcctctgcccgtacca
ggctcactcagtccgtcggatattcacggctctctctacccaccccccggaatgaacaac
ttgccatctattaggaacatacagcaagttactgtcactcagtag
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