Oncorhynchus tshawytscha (Chinook salmon): 112260345
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Entry
112260345 CDS
T05605
Symbol
si:ch211-106h4.4
Name
(RefSeq) MAM and LDL-receptor class A domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MAM
Ldl_recept_a
PycTM
Motif
Other DBs
NCBI-GeneID:
112260345
NCBI-ProteinID:
XP_024291145
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All DBs
Position
LG10:complement(47786230..47823012)
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AA seq
2365 aa
AA seq
DB search
MRRLLVLLSVFLILVSCCPESDFLCASGKCVPVDDVCDYKDDCDDGSDEEFCGSCDFERH
SCGWNDSSVGVYRWRLEMANISLIPGQDHTTGSPWGHVMHVEGDSATHFGKAVLLHSVDK
PMALGCHISFWYHLYDDFSVSARMYLKIIRNTGSTELLMISKPQQNRGWENATAFIGNQP
GGFKLEFSVDPSFLGAQDIMLDDISFESCGEGDIPAGSQLLTCDFEKDTCSWYPDQTVSL
LWKRARGIDHTTGSGYFMSINPGSKLDPSSTARLISYPQPAGTVICVSFWYRMYGSDIGS
VRFLTKSTREPETVVWMRHGTQGNKWRFTDLTFTTDTPLQFILEAVVGGKQGSIVIDDMV
VSSSSNVNGSCPAERECTFQGSLCGLQVEMSGDFTWNRTTGALGANTSSPALDHTLGTEL
GYYLSAQLWNHHVGSRGRMITGVNDATPRSGECWMFWYHMEGRASGELNIYLQPFPGSRT
QTLLWSRTGDQGDRWRHGRTTVLSPDIPYQVIFEAVAGDGREGDIAIDDLTLVNGPCPPQ
GFCDFEMDYCGWLNSPPAASGVDWEWWSGSSGGRFSPTVDHTTNSGQGHYIIFSTGVFSS
GLEITQLQSEPMEAVENACIEFWYFMDMWGTMDQMELTVYVNETGVLRSIWSRFGQLDPI
WYQAMVDYNATGPHQIIFSTRRPGMEDGGIALDDIHVRMNLSCGELIPTTSAPTTVPTTP
PATPMDCTFEHGLCNCVQETDDAFDWVHSQGLQVDQPWNGPLYDHTVGNDKGFYLMVNMS
GSVDGETAVVSVPLTFQTTDLCVGFWYYMLGPSVSTLDLLVQTKTSRTVVWTRQGSQDSE
WMNAQVQLGIVDTQEVQFSGSRNTSGSGFIAIDDVTVKEGACKDQHPCGFEVDSWCDFEV
DMSHKGRWGRLRGRKDRLDHTYRTENGFYLTVLKRNSEEIEVAQLLSSELSSTTGMCVRF
WYWLPAGSTDRLSVHVLRSEEQGLALWQRSGAPSTGWEVAELTVSAPNTFKVVFRAEHAP
GSDSTVQIDDVSMREGACTPTGSCDFESGQCTWVNEARTGGHDWVQADGRFHGPNTDHTS
QTPEGRFLLSPALPQNQSSRAVVVSEWIQSQTEATCLTIWYHMNGSESGALRVFERSGPT
KQELLFETQSGGSNWTRFSGSVEKSGPFQVLIDAESGDRGFIAVDDIIVTPGLCPDNGTS
GDFVGCSFENGTCDWADVSVGQFTWQRGRNGTTTENTGPSLDHTLGTELGWYMAVESSRG
DVNSFAALQSPTMKQASAVCLLEFYYHMYGTGVGELRVHLQEGSGTTPLWWRSGDQGDAW
RRGEVIVGRTPHVFTLFFQATRTFSQLGDIAIDDILFLNCSLPEPQDSCPAGVFTCSNRV
CVAQSRVCDYTDDCGDGTDEADCEKQGYEGHCSFEQGLCSWEESEVDTPGADWTFQKGES
AWPQHGPPRDHTKNNGAGHYVIPGSHLTEKGQTSELLSSTLLPSSNCTVRFFYYSQDEET
ASLTMRLRTDQDGADDTVLWTRDSSQDYSWHRAEVILFIPVNSKIVFQYKRGDNNIGLVA
VDDVSFFKECVHDPNNSQLPVNPPSSVPPTNPATPTPSDLPTTETTPTSSVPPTTSPCTF
ESDQCLWSDTSEGVNRWQRQEAGNHTVPETDHTTGTGFYMAVNFSQSQIEARLQSPALPS
LSPYCQILFYFQMRGKSVGSLTVLLQEAEGKEVALWSRTLTIAPQWRPEHLPLGQHLQPY
KVVFRSLAGESLSDVSPAVALDDISFLNCDTSYQPPALSAYDCSFARDLCGWMQGAEEEQ
DWQVKSGPTDTPNTGPAGDHTTTTGYYLYIESSAPSIVGSVAQLKSQLLPPAGPQGYCLS
FWYHMFGPTVGSLRMVLHTTQSRLGTLVWYRGRTQGDEWRLAQSHVTLQEVHLVVLEASV
GGEAGDIAIDDITFTAGPCAPSDLCDFEESSCNWLQQADDDGDWVRGSGSTPNPNTGPDY
DHTTNTATGHYFYLPSSGVDKPGQTARMASPLFPAGKGVCLQLWYHMSGRGMGTLNVYQW
SEQGALVMLLSRSGDQGALWRFAQATLQLDRDDYRIIVEGVKGSSDEGDMAFDDIQVSNS
PCPPPGRCDFQTNLCGWTNVAMAGVDEGDWLRGRGASPNPNTGPSVDHTTNSSLGYYLYV
DSSVGQWGDRSMLVSEILQADSRGYCLTFWFHMYGPHIGTLNLYRNDRKQHASGGAADVL
WTESGSQGDVWLEDSVYVDYTQPFWFVFMYWRGRAPGGDVALDDITIHPGHCYNTVPTDT
PTPDNSWAMWLGVVLSLLAVAVIAAVLFVLPRKRSTNLPEPLENVHVFDLSSGLEVGRES
ELSFFNTLYDSSSDPAEFRGVNSDA
NT seq
7098 nt
NT seq
+upstream
nt +downstream
nt
atgagaagattattggttctcctatcagtctttttgatcctagtttcctgttgtcctgag
agcgacttcctgtgtgcgtctggcaaatgtgtcccagttgatgatgtctgtgattacaag
gacgactgtgacgatggttccgatgaggagttctgtgggtcgtgtgattttgagcgccac
tcctgtggatggaacgacagcagtgtgggagtgtaccgctggaggctggagatggctaac
atcagcctgattcctggacaggaccacaccacgggatcaccctggggtcatgttatgcat
gtggaaggagactcagcaacacactttggcaaggccgtgttgttgcattccgttgacaaa
ccaatggctttgggatgccatataagcttctggtaccacctctatgatgactttagtgtg
tccgctcggatgtatctgaagataatccgaaacactgggagcacagaattactgatgatc
tccaagccacagcagaatagaggatgggagaatgctacggccttcatcggtaatcaacca
ggaggtttcaagttggagttttctgtggacccctcattccttggagctcaggacatcatg
ctggatgatatcagctttgagagctgtggggaaggggacatacctgcaggctcccaactc
ctcacctgtgactttgagaaggacacctgttcctggtacccagaccagactgtttccctt
ctgtggaagagagcaagaggaatagaccacactactggcagtggttatttcatgtccatt
aaccccggcagtaagctggacccctcatcaacagccagactcatcagctaccctcagcca
gcaggcacagtcatctgtgtcagcttctggtatcgcatgtacggcagtgatattggctcc
gtgaggttcctcaccaagtcaaccagagagccagagactgttgtgtggatgagacatggg
actcaggggaacaagtggcgctttacagaccttaccttcaccactgacaccccactacag
ttcatattggaggctgtggtgggtggtaagcaaggtagcattgtcatagacgacatggta
gtgagcagcagcagcaatgtgaatggctcctgtccggcggagagagagtgcaccttccag
gggtccctgtgtggcctgcaggtggagatgtctggagacttcacctggaacagaaccacc
ggggccctgggagccaacacctccagcccagcgctggatcacactctgggtactgaactg
ggatactacctgagtgcccagctgtggaaccaccacgtgggtagcagggggcgtatgata
acgggggtgaacgatgccacccctcgcagtggagagtgctggatgttttggtaccacatg
gagggcagggcctcaggggagctcaacatctatctgcagcccttcccaggctccaggacc
cagaccctactgtggagcaggactggagaccagggagatcgctggagacacggccgaact
acggtcctcagccctgatataccttaccaggtcatctttgaggctgtggccggggatggc
cgggagggggacattgccattgatgacctcacccttgttaatgggccgtgtccaccacaa
gggttctgtgactttgagatggactactgtggctggctgaacagtcccccagctgcgtca
ggagtggactgggaatggtggtcagggtccagtggaggacgcttctctccaacagtggac
cacaccaccaactctggccagggacactacatcatcttctcgacaggtgtattttcctct
ggactggagattacccagctgcagagtgaacctatggaggcggtagagaatgcatgtata
gagttctggtacttcatggacatgtggggaaccatggaccagatggagctgacagtctat
gtaaacgagacaggtgttctacgttcgatatggagcagatttggtcaactcgacccaatc
tggtatcaggccatggtggactacaacgctacaggaccacaccagatcatattttctacc
aggcgccccggcatggaagacggaggcatagccctggatgacatccacgttaggatgaac
ctgagctgtggagagctgatcccaaccacttcagcccccaccacagtacccaccacccct
ccagccactcctatggactgcacctttgaacatggcctgtgtaactgtgtccaggagacc
gacgacgccttcgactgggtccactcccaaggcctgcaggtggaccagccatggaatgga
ccgctgtatgaccacacggtcggaaatgacaaagggttttacctgatggtgaatatgtct
ggtagcgtggacggtgagaccgcggtcgtctctgttcctcttacgttccaaaccacggac
ctctgcgttggcttctggtattacatgttgggaccatctgtgtccaccctggacctctta
gtgcagacgaaaacatcaagaactgtggtgtggactcgccaaggcagccaggattcagag
tggatgaatgcacaggttcaactcggcatagtagacacacaggaggttcagttctctgga
agcaggaatacctctggcagtgggtttatagccatcgatgatgtcacagtcaaggaaggg
gcctgcaaagatcaacatccgtgtggatttgaggtagactcctggtgtgactttgaggta
gacatgagtcacaaggggcgctggggccgtttgagaggcaggaaggaccgactggaccac
acctacagaactgagaacggtttctatctgactgtgttgaaacggaactccgaggagatc
gaggtggctcagttgctttcttcagagctcagctctaccacagggatgtgtgttcgtttc
tggtactggctgcctgctggctccactgaccgtctgtcagtgcatgtcctgaggagcgag
gagcagggcctggctctgtggcagcgttctggagctccctctacaggctgggaggtggca
gaactcactgtgtccgcccctaacacctttaaggtggttttcagagcagagcacgcgccg
ggctctgattcgacggtgcagattgatgatgtgtctatgagggaaggagcctgtactccc
acgggcagctgtgactttgagtctggccagtgtacctgggtcaacgaggcccggacaggc
ggacacgactgggtacaggcagacggacgcttccatggcccaaacactgaccacaccagt
cagacaccagaggggaggtttttgctgagcccggccctgccacagaaccagagcagtcgg
gccgtggtggtctccgagtggatccagtctcagactgaagccacctgccttaccatctgg
taccacatgaatggcagtgagtctggggccctgcgcgtgtttgagcgctctggtccaaca
aaacaagagttactgtttgagacccagtctgggggatccaactggacccgtttttctggc
tctgtggagaagtccggcccattccaggtgctgatagacgcagaatctggagaccgtgga
tttattgctgttgatgacatcattgtaacgccagggctttgtccagacaatgggaccagc
ggcgactttgtggggtgctcctttgagaacggcacctgtgattgggcggatgtcagtgtg
ggccagtttacctggcagcggggcaggaatggcactaccacggaaaacactggcccgtca
ctagaccacaccctgggcactgagctgggctggtacatggcggtggagtctagccgtggg
gatgtgaacagctttgcagcgctgcagagtcccaccatgaagcaggccagtgctgtgtgc
ttgctggagttctactaccacatgtatggaaccggtgtaggggaactccgtgtgcatctt
caggagggttccgggaccactcctctgtggtggcggtccggggaccagggggacgcgtgg
cgtcggggggaggtgatcgtgggtcgtaccccccatgtgttcaccctgttcttccaggcg
accaggaccttcagtcagctaggggacatcgccatcgacgacatcctcttcctcaactgt
agtctgcctgagccccaggactcctgtccagctggagtgttcacctgctctaaccgtgtg
tgtgtggcgcagagccgagtgtgtgactacaccgacgactgtggggatgggactgacgag
gccgactgtgagaagcagggttacgaagggcactgcagctttgagcagggcctgtgctcc
tgggaggagagtgaggtggacacccccggggctgactggaccttccagaagggagagagc
gcctggcctcaacacgggccgccgagggaccacaccaaaaacaacggagcagggcactat
gtgattcccgggagccacctgactgagaagggccagacatcagagctgctttccagcact
ctgctacccagctccaactgcaccgtgaggttcttctactacagtcaggatgaggagacg
gccagtctgactatgaggctgaggacagaccaggatggggctgatgacactgtgctgtgg
accagagactcatcacaggactacagctggcacagggcagaggtcatactgttcataccg
gtcaacagcaagattgtattccagtataagagaggagataacaacattggtctggttgca
gttgacgacgtttccttcttcaaggagtgtgtccacgaccctaacaacagccagctgcca
gtcaacccaccttcctctgtccctccaactaatccagccacacccactccctcagacctt
cccacaactgaaaccacacccacttcctcagtccctcccaccaccagtccctgtacattt
gagagtgaccagtgtctgtggagtgacaccagcgagggcgtcaacagatggcagagacag
gaagccggaaaccacacagtaccagagacggaccacacgactggcacaggcttctacatg
gcagtcaatttcagccagtcccaaatcgaggctcgtctccagagtcccgccctcccatcc
ttgtccccctactgccagatactgttttacttccagatgcgtggtaaaagtgtaggttct
ctgactgttcttctgcaggaggctgagggcaaagaggtagcactatggtcacgcacactc
accatcgccccccagtggagaccagagcacctgcccctaggtcaacatctgcagccctac
aaggtagtgttcagaagcttagccggggagagcctctcagatgtctcccctgctgttgct
ctggacgatatctccttcctcaactgtgacacatcctaccaaccaccagccctgtctgca
tatgactgttccttcgcgagggacctgtgtggctggatgcagggggcagaggaggaacag
gactggcaggtgaagtctggtcctacagacaccccaaacactgggcctgctggggaccac
accaccaccactgggtattacctgtacatcgagagctctgctcccagcattgttggtagt
gttgctcagctgaagtcccagttgctgccccctgcagggccccaggggtactgcctctct
ttctggtaccacatgtttgggcccacagtaggatcactcaggatggtgctacacaccaca
cagtcccggctaggaacactggtgtggtacaggggtcgcactcagggggatgagtggcgg
ctggcccagagtcatgtgaccttacaagaagtccacttggtggtattggaggcctcggtg
ggtggggaagcgggggacatcgccatcgatgacatcaccttcaccgcgggaccctgtgcc
ccatcagacctgtgtgactttgaggagagcagttgtaactggcttcagcaggctgatgat
gacggtgactgggtcagggggtccgggtccacacctaaccctaacaccggtccggactac
gaccacaccaccaacaccgccactggacactacttctacctgccctcatcgggggttgac
aagcctggacagacagccaggatggcctccccacttttccctgcaggtaaaggggtgtgt
cttcagctgtggtaccacatgtccgggaggggcatggggacgttgaatgtgtaccagtgg
agtgaacaaggggccctggtaatgctgctctcccgctcaggggaccagggggctctgtgg
aggtttgcccaggcaacgctgcagctggacagggacgattacaggatcattgtggagggg
gtgaaggggagcagtgatgagggagacatggcctttgatgacatccaggtgtccaacagc
ccctgtcctccccctggacgctgtgacttccagaccaacctgtgtggctggaccaacgtg
gccatggcaggggtggatgagggggactggctgaggggcagaggggcctcaccaaaccct
aacactggacccagtgtggaccacaccaccaactcctccctaggttactacctgtatgtg
gacagttctgttggccaatggggagaccgatccatgctggtcagtgagatactgcaggcg
gacagcaggggttactgtctgactttctggtttcacatgtatggccctcacatcgggacc
ctcaacctctaccgcaatgacaggaaacagcatgctagtggaggtgctgctgatgtctta
tggacagagtcaggcagccagggagacgtgtggttggaggacagcgtatacgtggattat
acacagccattctggtttgtgttcatgtactggaggggccgggcccccggcggtgacgtg
gctctcgatgacatcaccatccatcctggtcactgctacaacaccgtacccacggacact
ccaactccagataattcgtgggccatgtggttgggagtggttctctctctgctggcggtg
gctgtcatcgccgctgttctctttgtcctcccacggaaacgctccaccaacctacctgaa
cctctggaaaatgtccacgttttcgatcttagcagcggtttagaagtcggaagggaatct
gagctgtcattcttcaacaccttgtatgattcctcttcagaccctgcagagttcagaggg
gttaactctgatgcttga
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integrated database retrieval system
