Oncorhynchus tshawytscha (Chinook salmon): 112265003
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Entry
112265003 CDS
T05605
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
otw04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112265003 (atg16l1)
04136 Autophagy - other
112265003 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112265003 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112265003 (atg16l1)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112265003 (atg16l1)
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
112265003 (atg16l1)
Others
Rab GTPases of specific organelles
Auto phagosome
112265003 (atg16l1)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112265003 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
ANAPC4_WD40
NBCH_WD40
eIF2A
DUF4200
CCDC22_CC
Nup160
ADIP
CCDC93_CC
Uso1_p115_C
Syntaxin-6_N
CENP-F_leu_zip
Lipoprotein_6
Mis12
HEF_HK
Motif
Other DBs
NCBI-GeneID:
112265003
NCBI-ProteinID:
XP_024297742
LinkDB
All DBs
Position
LG13:45752296..45807404
Genome browser
AA seq
621 aa
AA seq
DB search
MAERRVECSWKRHVGEQLKQRDRVQRQAFEEIIHQYNRLLEKSDLQAVLSERYQSDKYDF
QNRHDGSPGADSSRSDNLQQEMAQMRIRHQEELTELHKKRGELAQSVIELNHQIQQKDKE
IQHNEAKMQEYQRQIAELEGECRELRGQLQDLEQANQTLKDEYDALQITFGALEEKLRRT
TDDNQELVSRWMAEKSQEANKLNAENEKDCKRRQAKLQKELADAAKEPLPMDPDDDIEVL
AEDSGKGTREASPNRPLSRTPSKRISGQPPQSGLLDSISNIFGVSESVHPGLLPPDSRRR
PGNSYGTSPENTETTSGVCADVRVPSTALHVFEAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTG
HSGKVLAARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRAESIVCELELLGRVTSLDLNHDRTELLTCSRDDLVKIIDLRSNAVRQTF
SAQGFKCGADWTRVTFSPDGSYVAGGSADGALYVWNVLTGKLERTLDKNHCSAINSVSWS
PSGAYVVSVEKGSKAVLWSDM
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacgtcgtgtggagtgttcatggaagaggcacgtcggcgagcagctgaagcag
agggaccgtgtgcagaggcaggccttcgaggagatcatccaccaatataaccgtctcttg
gagaagtctgatctacaggctgttctttcagagagataccagtcggacaaatatgacttt
cagaacagacatgacggcagcccgggggcagactcgagtcgcagcgacaacctacagcag
gagatggcccagatgcgaatcaggcaccaggaggagctgacagagcttcataagaaaagg
ggcgagctggcccagagtgtgattgagctgaaccaccagattcagcagaaggacaaggag
attcagcacaatgaggccaagatgcaggagtaccagcggcagattgccgagctggaggga
gagtgccgggagctgcgtggacagctgcaggacctggagcaggctaaccagacgctgaag
gatgagtacgacgccctgcagatcaccttcggtgccctggaggagaagctgcggcgcacc
accgatgacaaccaggagttggtgtcgcgctggatggctgagaaatcccaagaggccaac
aagctcaatgcggaaaatgagaaagactgcaagcgcagacaagccaagcttcagaaggag
cttgcagacgctgcaaaggagcccctgcccatggacccggatgacgacatcgaggttcta
gctgaggattctgggaaaggcactagagaggcctctcccaaccggccgctcagccgcacc
cccagtaaacgtatctccggacagcctcctcaaagcggcctgttggactcaatctccaac
atatttggcgtatctgagtctgtgcatcccggactccttcctccagactccaggcgtcgt
cctgggaactcgtacggaacatcacctgaaaacacggagacgacctccggagtgtgtgcc
gatgtccgcgttccctccactgccctccatgtatttgaagcccatgatggagaagtgaat
gcggtgcggttcagcccaggctcccgactcctggccaccggagggatggaccgcagggtc
aaactgtgggaagtggtctccggtcgctgtgagcctaagggtgctctgactggcagcaac
gccgggatcaccagtatagagtttgacagtgctggctcctacttgctggctgcatccaat
gactttgccagtaggatctggactgtggatgactacagactgaggcacacgctgacaggc
cacagcgggaaggtgctggcggctcgctttctcctggacaacgctcgtatcgtctccggg
agctacgacaggactctgaaactgtgggacctgcgcagcaaagtctgcatgaagactgtg
tttgctgggtccagctgtaatgacatagtttgcacagagcagtgtgtcatgagcggccat
tttgataagaaagtgcggttctgggacatcagagcggagagtatagtctgtgagctggag
ctcctgggccgagtcacgtctcttgacctgaaccacgaccgcaccgagctgctcacctgc
tcccgggacgacctggttaagatcatcgacctgcgcagtaacgcggtccgccagaccttc
agtgctcagggcttcaagtgtggcgctgactggacccgagtcaccttcagtcctgatggc
agttacgtggcggggggctctgcagacggcgccttgtatgtgtggaatgtcctgacgggc
aagttggagcgcaccctggacaagaaccactgctcggccatcaactcggtgtcctggtcg
ccatcgggagcctacgtggtcagtgtggagaagggcagcaaggccgtcctctggtctgat
atgtga
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integrated database retrieval system
