Oligella urethralis: CEQ07_06325
Help
Entry
CEQ07_06325 CDS
T05343
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
our
Oligella urethralis
Pathway
our03030
DNA replication
our03410
Base excision repair
our03420
Nucleotide excision repair
our03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
our00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEQ07_06325 (ligA)
03410 Base excision repair
CEQ07_06325 (ligA)
03420 Nucleotide excision repair
CEQ07_06325 (ligA)
03430 Mismatch repair
CEQ07_06325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
our03032
]
CEQ07_06325 (ligA)
03400 DNA repair and recombination proteins [BR:
our03400
]
CEQ07_06325 (ligA)
Enzymes [BR:
our01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CEQ07_06325 (ligA)
DNA replication proteins [BR:
our03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CEQ07_06325 (ligA)
DNA repair and recombination proteins [BR:
our03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CEQ07_06325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEQ07_06325 (ligA)
MMR (mismatch excision repair)
DNA ligase
CEQ07_06325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEQ07_06325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AVL71064
LinkDB
All DBs
Position
complement(1323757..1325826)
Genome browser
AA seq
689 aa
AA seq
DB search
MSELQQELEQLYQEIMAHDYAYHVKDAPTISDAQYDSLVQRVLAIEAEHPEWIKPESPSQ
RVGAAPLTMFETVTHAVPMLSLNNGFNDGDIVAFNRRASDRLRAQHLLMAGEEIEYLAEL
KFDGLAINLRYEKGRLIQGTTRGDGMQGEDVTENIRTIRSIPLMLTGDEIPEVLEVRGEV
LMHKADFHKLNEAQEKLGIKPFVNPRNAAAGSLRQLDSKVTRSRHLRFYAYGWGQLESTV
ALAQTQSGMLERFRDFGFAISPERAVVKGVAGLLDFYQGIEAKRAALPFDIDGVVYKVNR
LALQEALGFVSRAPRFALAHKFPAEEMQTLLEGIDIQVGRTGALTPVARLKPVFVGGVTV
TNATLHNEDEIRRKDIRIGDTVIVRRAGDVIPEVLAPVLDLRPEDAQPFTMVQACPVCHS
SIERLPGEAVWRCTGGLFCRAQRVQSLIHAASRKALDIEGLGDKLAELLVEKEMVKSLAD
LYRLTAASVAGLERMGPKSAQNLMDAIEKSKGVKLANFIYALGIRHVGETTARDLATHFG
SITALAQASREELQAVEDVGPAIAESIQHFFAEEHNQQVIHELAELGLNPVYELRSGVAA
TGTADAASASSPNQAVLGKTFVLTGALSHWTRDEAAELLRQAGAKVTSSVSKKTDYVVAG
ADAGSKLRRAEELGVTVLDEDGLKALLGF
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagttacaacaagaattagagcagctgtatcaagagattatggcgcatgattat
gcctatcatgtcaaggatgcaccaacgatttccgatgcacaatatgatagtttagtgcag
cgtgtattggccattgaggctgagcacccggagtggattaagcctgaatcaccgtctcaa
cgggtgggagcagcgcctctcacgatgtttgaaacggtcacccatgcggtgccaatgctc
tccttaaataatggttttaatgacggtgatatagttgcttttaatcggcgggctagcgat
agactacgagcgcaacatttgctgatggcaggtgaggaaattgagtatttagcggagttg
aagtttgacggtttagcgattaatttacgctatgaaaaaggtcgcttgatccaaggcacc
acgcgtggcgatggcatgcaaggtgaggatgtgaccgaaaatattcgcacaattcgcagt
attcctttaatgctcactggtgatgagatacccgaggtgttggaggtgcgtggtgaggtt
ttaatgcataaagctgattttcataagctgaatgaggcacaggaaaaacttggcattaag
ccttttgtgaatccgcgtaatgcggctgccggtagcttgcgtcaattagactctaaagtt
acgcgcagccgtcatttacgtttttatgcttatggctggggtcagcttgaaagtactgtg
gccttagcccagacgcaatccgggatgttggagcgatttcgtgatttcggttttgctatt
tcaccagagcgtgctgtggtcaagggggtagcggggctactcgatttttatcaagggatt
gaagccaagcgtgccgcgctgccctttgatattgatggggtagtgtataaggtgaatcgt
ttagccttacaggaagcgctcggttttgtatcacgggcgccgcgctttgccttagcgcat
aagtttccagccgaggaaatgcagacgctgttggagggcattgatattcaggtcggacgt
actggtgccctgacaccggtggccaggttaaaaccggtgtttgtagggggcgtgactgtc
accaatgccaccttgcataatgaagatgagattcgccgtaaggatattcggattggtgat
acggtgattgtcagaagagcaggggatgtgattcctgaagtattggcgccggttttggat
ttacgacctgaagatgcgcagccctttaccatggttcaggcatgcccggtgtgtcactct
agcattgagcgtttaccaggagaagcggtatggcgttgtactggggggttattttgccga
gcgcagcgagtgcaaagtctgattcacgccgccagtcgcaaagcgcttgatattgagggt
ttaggcgataaactggccgagctattagttgaaaaagagatggttaagtcattagccgac
ttatatcgtttaacagcagcatcagtcgctggtttagagcgcatggggcctaaatctgca
caaaacctgatggatgccattgaaaagagtaaaggggtcaaattagctaattttatttat
gccttgggcatacgccatgtgggtgagaccacggcgcgtgacttagccacgcattttggc
agtatcacggccttagctcaggcgagccgtgaggaattgcaagcggttgaggatgtgggt
ccggcgattgccgagtcaattcagcatttttttgctgaggagcataatcaacaggtgatt
catgaattagctgaattgggcttgaatccggtgtatgagctgcgctcaggggtggccgcg
acaggcactgcggatgctgcttcagcgtcatcgccgaatcaagcggtgctaggtaaaacc
tttgtcttaacgggtgccttaagtcattggacccgcgatgaagcggcggaattgctacgc
caagccggcgctaaagtgacttcttcggtgtctaaaaaaactgactacgtggtagccgga
gcggatgctggtagtaaactgcgccgtgccgaagaactgggcgtgacagtattggatgag
gatggtttaaaggcgctattagggttttag
DBGET
integrated database retrieval system
