Oscillibacter valericigenes: OBV_25780
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Entry
OBV_25780 CDS
T01636
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ova
Oscillibacter valericigenes
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ova03032
]
OBV_25780 (topA)
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_25780 (topA)
Enzymes [BR:
ova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OBV_25780 (topA)
DNA replication proteins [BR:
ova03032
]
Prokaryotic type
DNA Topoisomerases
OBV_25780 (topA)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OBV_25780 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-C4_Topoisom
HC2
HypA
Toprim_4
Zn_ribbon_recom
DUF1272
PB1
DZR
Motif
Other DBs
NCBI-ProteinID:
BAK99776
LinkDB
All DBs
Position
complement(2422628..2425051)
Genome browser
AA seq
807 aa
AA seq
DB search
MAKQSLVIVESPAKAKTIEKYLGKEFRVKASMGHLRDLPKSTLGVDVEHDFDPVYQPIKG
KEDIISDLKKSAKAADTVYLATDPDREGEAISWHLKQLLNLPDSKTHRVTFNEITKKVVQ
ESIQEPRDIDQNLVDAQQARRILDRIVGYQLSPLLWKKIRRGLSAGRVQSVATRMVDDRE
REIEAFKPEEYWTLDAVFRGDDAKKTEFTAHYHGRDGKKVELKSAEEVEAVVEETRNQAF
AVSAVKRTDKQRSPSPPFTTSTLQQDASRKLSMTPRRTMAIAQQLYEGVDIAGEGTVGLI
TYMRTDSLRISEEALSAAKSFILGRYGKDYYPARTRHYKAKANAQDAHEAIRPSNVALTP
EQVKGDLTGEQYRLYKLIWSRFLASQMENAVYDSVSVDIAAGEHMFRATASGLKFAGYTA
VYEEGKDEEKEEKESPLPALREGEPLALKEFYRDQHFTQPPAHYTDATLIRAMEEQGIGR
PSTYAPTVSTIIDREYVIKEGKYLKITNLGRVVTELMKQRFSDIADLQFTAHMEQKLDSV
EEGVTPWKNVLRDFYGDFEKNLKDAETALEGTRIKVPDEVSEEICPECGRNLVVKSGRFG
RFLACPGYPDCSFTMPLVVVMPGRCPKCGGRLMKRTGVSKKTGKQYNYYCCEHRTARDEA
AKCDFMTWDVPVKDDCPVCGQTMFKRSGRGYKRPYCVNPNCSNFLPEDQRGYPKKKTDEG
GESAGSAEAAEESATDVTAAKKATAKKPAAKAKSKRTAKEPAAKKSAAGSGADKKTGVTK
TAARKPAAKKTAAKKTVAKKSAAEKEN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacagagcctggtcatcgtggaatctcctgcgaaggccaagaccatcgaaaaa
tatcttggaaaggagttccgtgtcaaggcttccatgggccatctgcgagacctgccgaaa
agcactctgggcgtggacgtggagcatgacttcgaccccgtttaccagcccatcaagggc
aaggaagacattatcagcgatttgaaaaagtccgcgaaagctgccgataccgtatatctt
gccaccgacccggaccgcgagggcgaggcgatctcctggcatttgaagcagcttttgaat
ctgccggacagtaagacccaccgcgtgacgttcaacgagatcacaaaaaaggtggtacag
gagtctattcaggagccgcgggatatcgaccagaatctggtggatgcccaacaggcccgg
cgtattctggaccgcatcgtgggctatcagctcagcccgcttctctggaaaaagatccgc
cggggcctctccgccgggcgggtgcagtccgtggccacccgcatggtggacgaccgggag
agggaaatcgaggcgttcaagccggaggaatactggacgctggatgccgttttccggggc
gacgacgcgaagaaaacggaatttaccgcccattaccacggcagagacggcaaaaaagtg
gagttgaagtctgccgaagaggtggaggccgtagtggaggagacccggaatcaggcgttt
gccgtttcggccgtaaagcggacagacaagcagcgcagtccctcccccccgtttaccacc
tctacgctccagcaggacgcgtcccggaagctgagcatgaccccccggcggaccatggcc
attgcccaacagctctatgagggcgtggacattgcgggcgaaggcaccgtgggccttatc
acttatatgagaaccgactccctgcgcatcagcgaggaggcgctctccgccgcaaagagt
tttattctgggtcggtacggaaaggattactatcccgcccgtacccggcactacaaggcc
aaggccaatgcgcaggatgcccatgaggcgattcgccccagcaacgtggcattgacgccg
gagcaggtgaagggcgatctgaccggggagcagtatcggctgtacaagctgatctggagc
cggtttttggccagtcagatggaaaacgccgtgtatgacagcgtgtctgtggacattgcg
gcgggagagcacatgttccgcgccaccgcgtcgggcttgaaattcgcgggttacaccgct
gtctatgaagagggaaaggacgaggaaaaagaggaaaaggaatccccactgcccgcgttg
cgggagggggaacccttggcgctgaaagagttctacagggatcagcacttcacccagccc
cctgcccactacaccgacgcaacgctcatccgcgccatggaggagcagggcatcggccgg
ccttccacttatgcccccactgtgtccacgattatcgaccgggagtacgtgatcaaagaa
ggcaagtacctgaagatcacgaacctgggccgcgtggtaacagagctgatgaagcagcgg
ttttccgacatcgcggatcttcaatttaccgcccacatggagcagaagctggactccgtg
gaggagggtgtgaccccgtggaaaaatgttctgcgggatttttacggtgattttgaaaag
aacctcaaggacgcggagaccgcgctggaggggacccgcatcaaggtccccgatgaagtc
agtgaggagatctgcccggagtgcgggcggaatctggtggtgaagtccgggcggtttgga
cggtttttggcctgcccgggatacccggattgcagcttcaccatgccgctggtggtggtg
atgccgggccgttgccccaagtgcggcgggcggctcatgaagcgtaccggcgtcagtaaa
aagaccggtaagcagtataattattactgctgcgagcaccgcaccgccagggacgaggcc
gcaaagtgcgactttatgacttgggacgtgccggtgaaggacgactgcccggtgtgcgga
cagaccatgttcaagcggtcgggccggggctacaagcggccatactgcgtgaatccgaac
tgttccaatttcctgccggaggaccagcgggggtatcccaaaaagaagaccgacgagggc
ggcgagtccgctggttccgcagaggcggcggaagagagcgccacggatgtgaccgccgca
aaaaaggcgactgcaaaaaagcctgccgcaaaagccaaatccaaaagaacggcaaaggag
cctgcggctaaaaaatctgccgccgggtctggggcagacaaaaagacaggtgtgactaaa
acggcggcaagaaagcctgccgccaagaagacagctgccaaaaagacagttgcaaagaaa
tctgcggctgaaaaagagaattga
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