Oxalobacter vibrioformis: NB640_03710
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Entry
NB640_03710 CDS
T08675
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ovb
Oxalobacter vibrioformis
Pathway
ovb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ovb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NB640_03710 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovb03021
]
NB640_03710 (rpoD)
Transcription machinery [BR:
ovb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NB640_03710 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
DDHD
Motif
Other DBs
NCBI-ProteinID:
WAW11280
UniProt:
A0A9E9P4H5
LinkDB
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Position
complement(742225..744429)
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AA seq
734 aa
AA seq
DB search
MIQQQAEAAAAAAEKGTIVTTDASALAQIDTSNYVLPKVKVPGRRGRKPKDYQPESDEDV
ALNAVERAEMKAAERTRAKDRRAKEKALLKDALSSDSEATAEEIERRRERLVALIKLGKE
RNFLTFAEINDHLPEHIVDPDAIEGIINTFNDMGISVYEHAPDEEDLLLTDNVINVTSDE
EAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAI
SSSPTTITEILEQAEKIRLGEVKIDDVIDGLTEDDEANSPSAMSASADEDEDEEAEEEEA
ADEEEEDEEEEETSSGNSSGGSSGFSAEQLEKLKEHVLDRFDVIAKCFTQMQKATAADAY
NSKGYIEAHECISDELLGMRFTAKFIEKLADTLRAQMDEIRQIERQILDVVVNRCGVPRA
HFIKTFPGNETNLDWVDEEVNADYPYSAILGRNVPMVKELQRKLIEIEEKSGMPLSDMRD
VNRKMTAGEMRARNAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGSEPDP
ATLALKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHVSM
RNVVKDVLDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSDKLKSFLESN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
ttgatacagcaacaggctgaggctgccgctgcggctgctgaaaaaggcacgattgtcacc
actgacgccagcgcactggcacagatcgacacgtccaattacgttttgccgaaagtcaaa
gtgcctggccgccggggcagaaagcccaaggactaccagccggagagtgatgaagatgtc
gcactgaatgcggttgagcgtgccgagatgaaggctgctgaaaggacccgggcaaaagac
agaagggcaaaagaaaaagcgctcctgaaagatgcgctttccagcgattcagaagcaacg
gcagaagaaatcgaacgccgccgtgagcggctggttgcactgatcaagcttggcaaggag
cgtaatttcctgacctttgctgaaatcaacgaccatcttcccgagcatattgttgatcct
gatgccattgagggcattatcaataccttcaacgacatggggatttcggtatacgagcat
gccccggatgaggaagacctgctgctgacagataatgtcatcaatgtcactagtgacgaa
gaggcggaagccgcagcggaagcggcactttccacggtggattcggattttggccggaca
accgatcctgtccgtatgtatatgcgtgaaatgggttccgtagaactgctgacgcgcgaa
ggtgaaattgaaattgccaagcggattgaagatggtctgaaagacatgatccaggcgatt
tcttccagcccgacgaccattacggaaattcttgagcaggcagaaaaaatccgtctgggc
gaggtcaaaattgatgatgttatcgatggccttactgaagatgacgaggcgaattcgccg
tctgccatgagtgcatcggcagatgaggacgaagacgaggaagccgaagaagaggaagcc
gctgacgaggaggaagaggatgaggaagaagaagaaacctcttcaggcaacagcagcggt
ggcagcagtggattctctgcagagcagctcgaaaaactgaaagagcatgtgttggacagg
ttcgatgtcattgccaagtgcttcacgcagatgcaaaaggccacggccgccgatgcctac
aattccaagggctatatcgaagcccatgaatgtatctccgatgagcttttggggatgcgt
tttaccgccaaatttattgagaagctggctgataccttgcgcgcccagatggatgagatt
cgccagatcgagcggcagatactggatgtcgttgtcaatcgctgtggtgtgccccgtgcc
cactttatcaagaccttcccgggcaatgaaaccaatctggactgggttgatgaagaggtt
aacgccgactatccctacagcgcgattctcggccggaatgtgccgatggtcaaggagctg
cagcgcaagcttattgagattgaagaaaaaagtggtatgccgctctccgatatgcgtgat
gtcaaccggaaaatgacagccggtgagatgcgggcgcgcaatgccaagcgggaaatgacg
gaggccaacttgcgtctggttatttcgattgccaaaaaatataccaaccgtggcttgcag
ttcctggacctgatccaggaaggcaatatcggtctgatgaaagcagtcgacaagtttgaa
taccgtcgtggctacaaattttccacctatgcgacgtggtggattcgccaggcgattacc
cgttcgattgcagaccaggcgcgcaccatccggattccggttcacatgattgaaaccatc
aacaagatgaaccgtatttcccgtcagatcctgcaggaaaccggttccgagccagatccg
gcaaccctggcgctgaagatggaaatgccggaagacaaaatccgcaagatcatgaagatt
gccaaggagccgatttccatggaaacgccgattggtgacgatgatgattcgcatctgggc
gactttattgaggacaacaatacgcttgcaccggcagatgccgccctgcatgtttccatg
cgcaatgtagtcaaggatgtgctggattccctgacgccccgcgaagccaaggtgctgcgc
atgcgtttcggggttgagatgtccacagaccatacgctggaagaggtgggtaagcagttt
gacgtgacccgtgagcggatacgccagattgaagccaaggcgttgcgtaaattgcgccac
ccgtcccgttcggataaactcaagagcttcctggaaagtaattga
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