KEGG   Pyrococcus abyssi: PAB2002
Entry
PAB2002           CDS       T00024                                 
Name
(GenBank) lig DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pab  Pyrococcus abyssi
Pathway
pab03030  DNA replication
pab03410  Base excision repair
pab03420  Nucleotide excision repair
pab03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAB2002
   03410 Base excision repair
    PAB2002
   03420 Nucleotide excision repair
    PAB2002
   03430 Mismatch repair
    PAB2002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pab03032]
    PAB2002
   03400 DNA repair and recombination proteins [BR:pab03400]
    PAB2002
Enzymes [BR:pab01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PAB2002
    6.5.1.6  DNA ligase (ATP or NAD+)
     PAB2002
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PAB2002
DNA replication proteins [BR:pab03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PAB2002
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PAB2002
DNA repair and recombination proteins [BR:pab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PAB2002
   NER (nucleotide excision repair)
    Other NER factors
     PAB2002
   MMR (mismatch excision repair)
    Other MMR factors
     PAB2002
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase TPR_1 Methyltransf_8
Other DBs
NCBI-ProteinID: CAB49465
UniProt: P0CL75
LinkDB
Position
complement(514003..515682)
AA seq 559 aa
MRYIELAQLYQKLEKTTMKLIKTRLVADFLKKVPEDHLEFIPYLILGDVFPEWDERELGV
GEKLLIKAVSMATGIDSKEIENSVKDTGDLGESIALAVKKRKQKSFFSQPLTIKRVYQTL
VKVAETTGEGSQDKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGLLRDAISLAFN
VKVELVERAYMLTSDFGFVAKIAKTEGNDGLAKVTIQIGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGEKVTIYSRRLENVTRAIPEIVEAIKEALKPTKAIVEGEL
VAIGEDGRPLPFQYVLRRFRRKYNIEEMMEKIPLELNLFDVLYVDGVSLIDTKFMERRKK
LEEIVETNGKVKIAENLITKNVEEAEQFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFT
KMLKPLIIKEEGKRVWIQPKVVIEVTYQEIQKSPKYRSGFALRFPRYVALREDKGPEDAD
TIERIAQLYELQERMKGKV
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaggtacatagagctggcccaactttatcagaagttagaaaaaacaacaatgaagctt
attaaaacgaggcttgttgcggactttctcaagaaggttccggaggatcatctcgagttc
atcccctacttaatccttggcgacgtcttccccgagtgggatgaaagggagcttggagtg
ggtgaaaagttattgataaaggcagtatctatggcgacgggaatagactccaaggagata
gaaaactcggtaaaagatacgggtgatttgggtgaaagcatagctttagccgtaaagaag
aggaaacaaaagagcttcttctcgcaacccttaacgattaagagggtctaccaaaccctc
gtcaaagttgccgagacaactggtgaagggagccaggataagaagatgaagtaccttgca
aacctgttcatggatgctgagcctattgaagctaagtacatagcgagaacggtgctcgga
acgatgagaactggagtagccgagggactgctcagggatgcgatatccctagcatttaac
gtcaaagttgagctcgttgagagggcttacatgctaactagcgactttggattcgtcgca
aaaattgccaaaactgagggtaatgatggattagctaaggtgacaattcagattggtaag
ccaataaagcccatgctagcccaacaggcggccaatataaaagaggcccttcttgagatg
ggtggggaagccgagtttgagataaagtacgatggagctagggttcaagttcacaaagac
ggagagaaagttacaatttactcgaggagactcgaaaatgtgactagggcaatacccgaa
atcgttgaggcgataaaagaagccctaaaacctacaaaagctatagtagagggagaatta
gtcgctatcggagaagatgggagaccactcccgttccaatacgttctcaggaggtttaga
aggaagtacaacatcgaggagatgatggaaaagatacctctcgagttgaatcttttcgac
gtgctatatgttgatggggtaagcttgatagacacaaagttcatggagaggagaaagaag
ctagaggagatcgtagagacgaatggaaaagttaagatcgctgagaacttgataaccaag
aatgttgaggaggccgagcagttctacaagagagccctcgagatgggacacgaagggttg
atggccaaaaggttggatgcagtttacgagcccggtaacaggggtaagaagtggctcaag
ataaagccgacaatggagaatttagaccttgtgataataggggcagaatggggagaagga
agaagggcccatctcctcggttctttcatcctcggagcgtacgatcccgagactggtgaa
ttcttggaggttggaaaggttggaagtggattcactgatgatgacttagtggagttcacc
aagatgctaaagcccctcataataaaggaggaagggaagagggtctggattcaaccaaag
gtcgttatagaggtaacataccaagaaatccagaagagtccgaagtacaggagcgggttc
gcattgagattcccaaggtacgtggccctgagagaggataagggtccagaggatgcagat
acgatagagagaatagcccagctttacgaacttcaggagaggatgaagggaaaggtgtga

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