Polycladomyces abyssicola: JIR001_23010
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Entry
JIR001_23010 CDS
T07192
Name
(GenBank) hypothetical protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
pabs
Polycladomyces abyssicola
Brite
KEGG Orthology (KO) [BR:
pabs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pabs03400
]
JIR001_23010
Enzymes [BR:
pabs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JIR001_23010
DNA repair and recombination proteins [BR:
pabs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
JIR001_23010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Cas_Cas4
AAA_12
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BCU82518
UniProt:
A0A8D5ZPN3
LinkDB
All DBs
Position
complement(2268073..2271663)
Genome browser
AA seq
1196 aa
AA seq
DB search
MTHSFTPEQWEAINTLDVDCIVSAGAGSGKTRVLVERYLRILSTHSDDPDILDHIVAITF
TERAAAEMKERIRQGVAERLASARKHNTAEETWWYRLLSEMERARVMTIHAFCARLLREY
PIEADVDPDFTVMDETEVAWCLANAAERAVSAVPQTTELSEEVKRAWETWVTGVGLTRAA
RELAALYRQMTGMGWGPGELTERTYRDLEKLEDRLGEEEREASLSLLSAGRALMEITGGK
RVQAFQTEWPELERRWLKAGSRMEKRDVLTRLEMLLSGNWGRKEEILRPRDRMKQTLQRL
NEVVDGWLSLPEERRLIDAVLWAVSHLHEAYESVKQKLGGLDFDELQLRACRLLEVHPHV
RLEVSRRIRYLMVDEFQDTNELQKRLIDLLCREPDGRTIPGKRFVVGDPQQSIYRFRGAD
VSVFGKTKTELLSEGGKAVSMRDNFRSHPDVVAFVNALFSRLMSGQLDSASVYEPATAQG
SMDTKPPCVECLVIPEAEEGEREDRHEREAYWLARRIREMIDEGTRPGQIAVLFRAMNHV
KCYERALAEAGVPFYVVKGRGFYDRQEVLDVLHFLRFLHDPDDVLSLVGVLRSPFCAVSD
ETLFLLAQAGAWSMPPASWLEVDGLAEAERMKLSRFAALLEQARLRIGRVPVSELIRFLL
DESDYRLVVWGTPSGKQANANLDKLIRLAGTRRDTAAFSLTSFLRMMDRLREEPVPETEA
PVESDDGDSVKLMTIHQAKGLEFPVVFIPDLSWRRNRPTSELLGDAEAGLAVRLRTPHGD
KRETYRWRRLREREEQLEIEESVRLFYVAVTRAKQRLVLSGEPEEHKQAKKGEPLLSVDS
WSQWLDGVLGWENIDEETGKWTFPDGETWIRVRRVEAGEAAALPSAHTELDSVLLTSRTW
FERESGGHGYSDDSAWALMESRGLTERDGLGISVTDLMTLFNCPRKYLYKRWINVPTELE
TERNTTESNEEVSPVPLSSTLIGSVVHRVIECCPDDVVRAEELMEVYRSAVAEYNGYRAD
IPALWDEVRPLLQTYLDSRFHLRPKRKDWKEVPFVQRVAGLEVEGIIDRLIQHENGEWEL
VDYKTNRATDYGWDVLAREYEPQLRLYAWATHRQWGVLPRQVVLVFLRANREVTVEVTPE
LIRKTEEELHTVAEWLMDEENPNRFEPRPGARCAACDFREICPAAETRDSIRFMEA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgacccactcgtttacaccggaacaatgggaagccatcaacacactggatgtggactgt
atcgtttccgccggtgctggatcgggcaaaacgcgggtactggtggagcgatacctgcgc
atcttgtccacccattcggatgatcccgatatcctggatcacatcgtcgccatcaccttt
acggagagagccgccgcggagatgaaagagcgtattcgtcagggagtggcggaacggctg
gcatcggcccggaaacataacaccgccgaagaaacgtggtggtatcgccttctgtcggaa
atggaacgcgcccgcgtgatgacgatccacgcgttttgtgcccgcttgctgcgggaatat
ccgatcgaggccgacgtggatcccgattttactgtgatggatgagacggaagtggcctgg
tgtctggcgaatgccgccgaacgggcggtttccgccgtgccgcaaacaaccgaactgagt
gaggaagtgaaacgggcgtgggagacatgggtgaccggagtgggactcacccgtgcggct
cgcgaattggccgcgttgtaccgacagatgacgggcatgggctgggggcctggtgagtta
acggagcggacgtatcgggatttggagaaactggaggatcgattaggcgaagaagaacgg
gaggcgtcgctctcgttgttatctgccgggcgcgcgttgatggaaatcacgggcggaaaa
cgcgtccaagcgttccagacggaatggccggaactggaacggcgttggctaaaagcgggt
tcccggatggagaaacgggatgtacttacgcggttggaaatgttgttgagcgggaactgg
gggcgaaaagaagagatcctccggccgcgggaccggatgaaacagaccctccagcgactg
aatgaagtcgtggacggatggctgtcactcccggaagagcgcaggttgatcgacgccgtc
ctgtgggcggtctcccatctgcacgaagcatacgaatcggtgaaacaaaagttgggcggg
ttggatttcgacgaattgcaattgcgcgcctgtcggctgttggaagtccatccgcatgtg
cgtttggaagtgagtcggcggattcggtatctgatggtggacgaatttcaggacaccaac
gaactgcaaaagcggctgatcgatttgctttgccgggaacccgacggacggacgatcccg
ggtaaacggttcgttgtcggtgatccccagcagtcgatctaccggtttcgaggcgctgac
gtatccgtgttcggaaaaacgaaaacggaactgttgtccgagggcgggaaagccgtttcc
atgcgggataatttccgctcccatcctgatgtggtggcgttcgtcaatgctttgttctcc
cggttgatgtctggtcagcttgactctgccagtgtgtacgaaccggcaacggcacaaggc
agtatggataccaagccgccctgcgtggagtgtttggtcattcccgaagcggaagagggg
gaacgtgaggatcggcacgaacgggaagcctattggttggcaaggcgcatccgggagatg
atcgatgaggggacgcgtcccggtcagattgctgtcttgtttcgagccatgaaccatgtt
aaatgttatgaacgggcgttggcagaagcgggggtaccgttttatgtggtgaaagggcgc
gggttttacgaccggcaggaagtgctggatgtgcttcatttcctcaggtttttgcacgat
ccggacgatgtcctctcgttggtgggtgtgttgcgatccccgttttgtgcggtttcggac
gaaaccctctttctgttggcccaggcgggggcctggtcgatgccaccggcgtcttggttg
gaagtggatggcctcgctgaagcggagcgaatgaaattgtcccgttttgcggcactgttg
gaacaagcccgtttgcggatcggacgtgtaccggtgtcggagctgatccggtttttattg
gacgagagcgattaccgattggtggtgtgggggacgccgtccggcaaacaggccaatgcc
aatttggacaagctgatccgtttggctggtacccggcgcgatacagcggcattttctttg
acctcttttttgcggatgatggatcgtcttcgggaagaacctgttccggaaacggaagcg
ccggtggaatccgacgacggcgacagtgtgaaactgatgaccatccaccaggccaaaggc
ttggagtttcccgtcgtgttcataccggatctctcctggcgtcgcaaccgcccgacatcg
gagctgttgggggatgcggaagcggggttggcggtccgtctgcgcaccccgcatggggat
aaacgggaaacctatcgctggcgtcgactccgggagcgggaagaacagttggaaatcgag
gaatcggtccgcctgttttacgtggctgtcaccagggccaagcaacggctcgtgctgagt
ggggagccggaagaacacaagcaggccaagaaaggagagcctctcctttccgtcgattcg
tggagccaatggctggacggtgtgctgggttgggagaacatcgatgaagaaacgggaaaa
tggacatttcccgacggggaaacgtggattcgcgttcgcagggtggaagcgggggaggcg
gccgccctgccgtcggctcataccgagttggactccgtgctgttgacgtcccgcacttgg
tttgaacgggaaagtggcgggcatgggtactcggacgactccgcgtgggcgctgatggag
tcgcgcgggttgacggagcgtgacggtttgggtatcagtgtgaccgatctgatgacgctg
ttcaattgtccgcgcaaatatctttacaaacggtggattaacgtcccgaccgagttggaa
accgagcggaataccacggagtcgaatgaggaagtctcgcccgtgccgttgtcgtccaca
ttgatcggaagtgtggtccaccgcgtgatcgagtgctgtcccgacgatgttgtccgggcg
gaagagttgatggaggtatatcggtccgcggtggccgagtacaatgggtatcgggcagac
atccccgcattgtgggacgaagttcgcccgttgttgcaaacttacttggacagccgtttt
catcttcgacccaagcggaaggattggaaggaagtaccttttgtccagcgtgtcgccgga
ttggaagtggaagggattatcgaccgtctgatccagcacgaaaacggcgaatgggaattg
gttgattacaaaaccaaccgagcgaccgattatggttgggatgtgctggcccgggagtac
gagccgcaattgcgtctctacgcgtgggctacccatcgtcagtggggcgtgttgcctcgg
caggtggtactggtgtttcttcgtgccaaccgtgaagttaccgtggaggtcacgcccgaa
ttgatccggaaaacggaggaagaattgcacacggtagccgaatggttgatggacgaagaa
aacccgaaccggtttgaaccccgtccaggcgcacgttgcgccgcctgcgattttcgggag
atctgcccggcagccgaaacaagagattccatccgtttcatggaagcatga
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