Syntrophotalea acetylenica: A6070_04230
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Entry
A6070_04230 CDS
T04585
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pace
Syntrophotalea acetylenica
Pathway
pace03030
DNA replication
pace03410
Base excision repair
pace03420
Nucleotide excision repair
pace03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A6070_04230
03410 Base excision repair
A6070_04230
03420 Nucleotide excision repair
A6070_04230
03430 Mismatch repair
A6070_04230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pace03032
]
A6070_04230
03400 DNA repair and recombination proteins [BR:
pace03400
]
A6070_04230
Enzymes [BR:
pace01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A6070_04230
DNA replication proteins [BR:
pace03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A6070_04230
DNA repair and recombination proteins [BR:
pace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A6070_04230
NER (nucleotide excision repair)
GGR (global genome repair) factors
A6070_04230
MMR (mismatch excision repair)
DNA ligase
A6070_04230
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A6070_04230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
APG45287
UniProt:
A0A1L3GK76
LinkDB
All DBs
Position
complement(929054..931069)
Genome browser
AA seq
671 aa
AA seq
DB search
MNKAEAKSRHRQLCAELHRHNLLYYTHDRPEISDAEYDQLFRELQELEQAHPELVTPASP
TLRVGAAPLVQFEPVRHALPMLSLENALNEAELRDFDARVKRFLGREQTVRYVCELKIDG
VAVELVYRDRVLAVGSTRGDGATGEGITENLRTIPSIPLVLSGDAPTLLEVRGEVYIDLG
DFQTFNQERQEEGLQVFANPRNAAAGSLRQLDSSVTARRPLKIFCYGIGQFSGALPTSHH
ELLQQLHQWGLRVNLDHTRTFEGIEPVVDYFRQLQDMRDRLPYEIDGLVVKVDELALQRE
LGEKTRSPRWAIACKFPPRQAVTIVEDIILQVGRTGAITPVAQLRPVEVSGVTVSRASLH
NWDEIARLDVKIGDTVIVERAGDVIPDIVRVLMEHRNGSERSVPLPQYCPVCGGPVAKLE
GEVVPRCQELSCPARLRESIKHFVSRRAMDIDGLGERTIEQLLRLELIDSVADLYRLTRE
DLLRCERLADKSADKLLKAIIASKSRPLGRFLFALGIRHVGEHLASLLARHFGSLEEVCR
ATREELLAIHEIGPQVADSVIDFFAKTRNREILSALQKAGVAPQVETRRGNGPLTGRIFV
FTGSLTRLNRKQAQQTVERLGGRASGSVSGKTDWVIAGEAAGSKLAKARELGIRILSEEE
FLQMMSEMEKA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggccgaagccaaaagccgccaccggcagctgtgcgccgagctgcaccgccac
aacctgctttattatacccacgaccgtccggaaatatcggatgccgaatacgaccagctt
ttccgggaactccaggaactggaacaggcccatcccgaactggtgacgcccgcctcgccc
accctgcgggtaggcgcggcgccgctggtacagttcgagccggtgcgccacgcgttgccg
atgctgtcccttgaaaacgccctcaacgaggcggaattgcgggattttgacgcccgcgta
aaacgcttcctgggccgcgaacaaaccgtgcgctacgtctgcgaactgaagatcgatggc
gtagcggtggagctggtctatcgtgaccgcgtccttgccgtcggctctacccgtggcgac
ggcgccaccggcgagggtatcaccgaaaatctgcgcaccatcccttccatccccctggtt
ttgagcggcgacgcccccacgctactggaagttcggggcgaagtgtatatcgatctgggc
gatttccagaccttcaatcaggaacggcaggaagaaggcctgcaggtgttcgccaatcct
cgcaacgcggctgccggcagcttgcgccagctcgactcgtcggtaaccgccaggcggccc
ctgaaaattttctgctacggcatcggccagttctccggtgcgttgccgaccagtcaccac
gaactgctgcagcaacttcaccagtggggactgcgcgtgaatctggaccacacccggacc
ttcgaggggatcgagccggtcgtggactatttccggcaactgcaggacatgcgcgaccgg
ctgccttacgaaatcgacggcctggtggtaaaagtcgacgaactggccctgcagcgcgaa
ctgggagaaaaaacccgttccccgcgctgggccatcgcctgcaaattcccgccgcgtcag
gccgttaccatagtcgaggatatcatcctgcaggtcggacgcaccggcgccatcaccccc
gtggcccagctcaggccggtggaagtcagcggcgtcaccgtgtcgcgcgccagcctgcac
aactgggacgaaatcgcccgactggatgtcaaaatcggcgacacggtgatcgtggaacgt
gccggagatgtcataccggatattgtcagggtgttgatggagcaccgcaacggcagtgag
cgcagcgtgcctctgccgcaatactgcccggtctgcggcggaccggtggcaaaacttgag
ggcgaagtggtccctcgctgccaggaattgtcctgtccggcacgcctgcgcgaatcgatc
aagcacttcgtctcccgccgtgccatggacattgacggcctcggcgaacgcaccatcgag
caactgctcaggctggagctcatcgacagcgtggcggacctctaccggcttacccgggaa
gacctgctgcgctgcgaaagactggccgacaaatcggcggacaaactcctgaaagccatt
atagccagcaaatcccgcccgctcgggcgcttcctcttcgccctgggaatccgccacgtg
ggggagcacctcgccagcctgctggcccgccatttcggctcactggaagaagtgtgccgc
gcaacacgcgaggagctgcttgccattcacgaaatcggcccccaggtggccgacagcgtc
atcgactttttcgccaagacgcgcaaccgtgaaatcctctccgccctgcagaaggccggc
gtggcgccacaagttgaaacccggcgcggcaacggcccgctgaccggcaggatcttcgtt
ttcaccggcagcctgacccgcctcaaccgcaaacaggcgcagcaaaccgtcgaacgcctt
ggcggacgcgccagcggctccgtcagcggcaaaaccgattgggtaatcgccggagaagcg
gccggcagcaaactggccaaggcgcgtgaactggggattcgcattctcagcgaagaggag
ttcctgcagatgatgagcgaaatggaaaaagcatga
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