Cutibacterium acnes hdn-1: TIA1EST1_04035
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Entry
TIA1EST1_04035 CDS
T03470
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pacn
Cutibacterium acnes hdn-1
Pathway
pacn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pacn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TIA1EST1_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacn03400
]
TIA1EST1_04035
DNA repair and recombination proteins [BR:
pacn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TIA1EST1_04035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TIA1EST1_04035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_29
RsgA_GTPase
AAA_21
nSTAND1
AAA_33
APS_kinase
AAA_22
DnaJ_CXXCXGXG
nSTAND3
ATPase
AAA_23
NACHT
AAA_14
Viral_helicase1
SLFN-g3_helicase
cobW
ATPase_2
T2SSE
NB-ARC
Septin
NTPase_1
MeaB
ExoX-like_C
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AID35653
LinkDB
All DBs
Position
876496..879456
Genome browser
AA seq
986 aa
AA seq
DB search
MSDHIIVRGAREHNLRNVNLDLPRDAMIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSS
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSRNPRSTVGTITEIHDYLRLLWARVGKPH
CPVCGELISRQTPQQIVDRLMALDEGTKFQVLAPVIRGRKGEYVELFRQLTTDGFTRVRV
DGDVHRLGQVPPLDKKRKHDIDVVVDRIAVKPSAKQRLTESVETALGLAHGIVGVDFVDR
DLSDPHRERRFSETMACPNQHDIDIEELEPRQFSFNGPWGACPTCSGLGATLEVDPELVV
PDSGLSLLEGAIAPWSGPRVANHYQHVFAGLAENHGFDATLPWSELPVKARKLVLHGDGD
PVMISYRNRFGRVRTYSQNYEGVLHYVRRRYDEAETDSARSRWGQYLREVPCRDCHGKRL
KPTSLAVTVGGRNIAEVSDMSIGEASEFLNALTLTEREATIAGRVIKEVRARLRFLVDVG
LDYLTLSRSAGSLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIDTLVRL
RDLGNTLIVVEHDEDTIRMADWVVDVGPGAGEHGGEVVVSGTVDELLASERSVTGAYLSG
KRSIPLPATRRPCTGRELVVRGARENNLKGMNVTFPLGQLVVVTGVSGSGKSTLVNQILY
TSLAHRIHGARTVPGKHETITGVEEIDKVIHVDQSPIGRTPRSNPATYTGVFDKIRALFA
QTPEAKMRGYQPGRFSFNIKGGRCENCQGDGTIKIEMNFLPDVYVPCEVCHGARYNRETL
EVHYKGKTIAEVLDMPIEEACTFFEPISSIHRHFQTLVEVGLGYVRLGQPATTLSGGEAQ
RIKLASELQKRSTGRTLYVLDEPTTGLHFEDIRKLLLVLQRLVDQGNSVFVIEHNLDVIK
TADWIIDMGPEGGNGGGTVVAEGTPEQVAAVEGSYTGQYLSEILAGHEVAVGDEPALVEA
PADAGKRKTTARRKAKKTTSPRKKSR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaccacatcatcgtccgaggcgcccgggaacacaacctgcgcaatgtcaatctg
gaccttcccagggacgccatgattgtgttcaccggtctgtcgggatcgggcaagtcctcc
cttgctttcgacactatcttcgccgagggacagcgtcgatatgtggagtcgctttcctcc
tatgcccgccagtttctgggtcagatggataagcccgatgtcgactttatcgagggcctc
agcccggcagtttccatcgatcagaagtccacgtcccgcaaccctcgctcgaccgttggc
accatcacagagattcatgattatctgcgcctgctctgggcccgcgtcggtaagccccac
tgcccggtgtgcggcgagctcatcagccgtcagaccccgcagcagattgtcgaccgcctc
atggcgctcgacgagggtactaagtttcaagtcctcgccccggtgattcgtggacgcaaa
ggtgagtacgtcgagctgttccgacagttgacgaccgatggcttcacccgagtacgggtg
gatggagacgttcatcggcttggacaggtgccaccgctggataagaagcgcaagcacgac
atcgacgtcgtcgttgatcggattgcagtcaagccgtcggctaagcagcgcctcaccgag
tcggtggagacggcgttggggctggcccacggcatcgtcggcgtcgatttcgtcgaccgc
gatctgtctgatccgcaccgggagcgtcggttctccgagacgatggcttgcccaaatcag
catgacatcgacatcgaggagctagagccgcgtcagttctccttcaatgggccctggggt
gcttgcccgacatgttctggtctgggcgcgacactcgaggtcgacccggaattggtcgtc
cccgattccggtctgagcttgcttgagggagccattgcgccctggtctgggccacgggtg
gcgaaccattaccagcacgtctttgctgggctggcggagaaccacgggtttgacgcgact
cttccgtggtccgagttgccagtaaaggctcgcaagctggtcctgcacggtgatggcgac
ccggtcatgatctcgtaccgcaaccgattcgggcgggtgcgcacctactcgcagaattac
gagggagtgctgcattatgtgcgtcgacgctacgacgaggccgagacggactctgcacgc
tcccggtggggccagtatctgcgtgaggtcccgtgccgagattgccatggcaagcgtctc
aagccgacgagcctggccgtaacggtcggtgggcgaaacatcgccgaggtctcagatatg
tctattggggaggcttctgaattcctcaatgcgttgacgttgaccgagcgggaagccacc
atcgcggggcgagttatcaaggaggttcgcgcccggctgcgattccttgtcgatgtcggt
ctcgactacctcaccttgtcacggtcggcggggtccctgtcaggtggtgaggctcagcgt
attcgactcgctacccagattggttcgggtttggttggggttctctacgtccttgatgag
ccctccatcggcttgcaccagcgtgacaaccgacgcctcatcgacacccttgtgagattg
cgagatctcggtaacaccctcatcgtcgtcgagcatgatgaggacaccattcggatggcg
gactgggttgtcgacgtcggcccaggggccggtgagcacggtggtgaggtcgtcgtgtca
ggaaccgttgacgaactgctggccagtgagaggtccgtgaccggtgcgtacttgtcgggc
aagaggtcgatcccattgccggcgacccgacgcccctgcacgggacgtgagctcgtcgtc
aggggagcccgtgagaacaacctcaagggaatgaatgtcaccttcccgctagggcaactc
gtcgtcgtcaccggggtgagcggctcgggcaagtccactttggtcaaccaaatcctctac
acatcgctagcgcatcgtatccatggcgccaggacggtaccgggtaagcatgagacgatc
accggtgtcgaggaaatcgacaaggtgattcacgtcgaccaatcgccgatcggacgcaca
ccaagatcgaatccggccacctataccggtgtcttcgacaagatccgtgctctctttgcc
cagacccccgaagctaagatgcgcggctatcagccgggtcggttctccttcaacattaag
ggtggacgctgcgagaactgtcagggtgacggcaccatcaaaatcgagatgaacttccta
cctgacgtctatgtgccctgtgaggtgtgccacggtgctcggtacaaccgtgagactttg
gaggtccattacaaaggcaaaacgatcgctgaggttttggatatgcctatcgaggaggct
tgcaccttcttcgaaccgatttcgtcgatccatcgtcacttccagaccctcgtcgaggtt
ggtttgggatacgtcaggctcggccagcccgcgacgaccctatctggtggggaggcccag
cgcatcaagctggcctccgagttgcagaaacgttccacgggtaggaccctgtatgtcctt
gacgagcccaccaccggcctgcacttcgaggacatccgcaagctgctgctggtgttgcaa
cgtcttgtcgatcaaggcaactcggtcttcgtcattgagcacaatctggatgtcatcaaa
accgccgattggatcatcgacatggggcccgagggaggaaatggtggcggaaccgttgtc
gccgagggcactccagagcaggttgccgccgtcgaggggtcctacaccggccagtatctt
tcggagatcctggctgggcacgaggtagcagtcggggacgaaccggcgctcgtcgaagcg
ccagcggacgccgggaaaaggaaaaccaccgccaggaggaaggcaaaaaagaccacgagc
ccacgcaagaagtcgcgttga
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