Pigmentiphaga aceris: FXN63_03305
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Entry
FXN63_03305 CDS
T06198
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pacr
Pigmentiphaga aceris
Pathway
pacr02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pacr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FXN63_03305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pacr03021
]
FXN63_03305
Transcription machinery [BR:
pacr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FXN63_03305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HTH_23
Sigma70_r4
Sigma70_ECF
HTH_38
HTH_24
HTH_20
Xre-like-HTH
HTH_28
HTH_17
HTH_29
GerE
HTH_36
HTH_11
HTH_40
TnsD
HTH_10
DUF5788
HTH_AsnC-type
HTH_50
DUF3853
Rv2175c_wHTH
DUF6362
LacI
Motif
Other DBs
NCBI-ProteinID:
QEI04976
UniProt:
A0A5C0ATH6
LinkDB
All DBs
Position
802868..803386
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AA seq
172 aa
AA seq
DB search
MSHTLSTFPVAEAPAIEALYRAHHSWLLGRLKRRLSNSADAEDVTAETFVQVVEQGSTSD
IREPKAFLTTIAKRVLFHLWRRQDLERAYLQTLMHQPEAASLSVEESALLVEAITQIDRA
LDTLPLPVKTAFLYSRLDGLSYPEIAKLLGVSLATVERHMKRALLHCLTASL
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacacactttccacgtttcccgtcgccgaggcccccgccatcgaggcgctgtat
cgagcgcatcactcctggttgctggggcgattgaagcggcgtctgtccaacagcgcagac
gcggaagacgtaaccgcagagacctttgtgcaggtggtggagcagggcagcaccagcgat
atccgcgaaccgaaagcgtttctgacgaccatcgccaagcgggtgctgttccacttgtgg
cgacgccaggacctggagcgcgcctaccttcagaccttgatgcaccagcccgaggcggca
agcttgtcggttgaagaatctgcgttgctggtcgaagccatcacgcagatcgaccgggcg
ctcgacaccttgcccttgccggtgaaaaccgcgtttctgtacagccgactggatggcctg
agttatccggagattgccaagctgctgggtgtgtcgttggccacggtcgaacgccacatg
aagcgtgcgctgctgcattgtctgacagcatcgctgtga
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