Paraburkholderia acidisoli: FAZ98_32875
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Entry
FAZ98_32875 CDS
T07287
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pacs
Paraburkholderia acidisoli
Pathway
pacs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FAZ98_32875 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pacs03400
]
FAZ98_32875 (ligD)
Enzymes [BR:
pacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FAZ98_32875 (ligD)
DNA repair and recombination proteins [BR:
pacs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FAZ98_32875 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGZ66560
UniProt:
A0A7Z2JKK8
LinkDB
All DBs
Position
4:complement(883903..886689)
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AA seq
928 aa
AA seq
DB search
MKHKLEQYESKRRFDETPEPRGQHAHPPARSSARRGAPSRARKDKDSAAFVIQRHDASHL
HYDFRLELDGTLKSWAVPKGPSLDPTVKRLAVHVEDHPLEYGSFEGRIPAGSYGAGTVDI
WDHGVWHPEGGMRAARDAYAQGRLKFTLDGDKLHGSWALVRSSMKSGKQDTWLLIKHRDA
DARSEDDYKVIDDRAEHAPNKKARATAKTSKSSGGTRAASAAKGANDANGATPKAEARVA
KAADATATARGTAARKAVGGPKARGAKAIEGARRAALPATLAPELATPAEAPPQGEDWLY
ELKYDGYRVLARIDRSARGEGDVRIYTRTGNDWTAKFPRQVQALRALDVDKAWLDGEAVV
LDASGVPDFQALQNAFDAGSPDAITFWLFDAPWLDGMDLRAAPLEARRSALEAVLARHTD
DALRFSEAFEGDPETLLAAACEAKLEGLVAKRRDSRYTSTRSSAWLKLRCTQRQEFVIGG
YTDPAGSREGFGALLLGVYDEQGALQYAGKVGTGFDNARLKSMAKDLKARASKASPFAAV
PAAETRARVHWVQPQLVAEVRFKTWTSAGVVRHASFIGLRTDKPAENIVREQQTERSTAA
SKAVSAKATSSGARGRASESVTMKSKASRGETQVGGVRISNPDRVMDEQSGLRKIDLVEY
FEWITPWLLPHLKQRPVALARTPKGVGGELFFQKHATKLQIPHATQHADLDPGHEPLLTL
DSVKALVGAAQMDTIELHTWNALVTSIEKPDRLVFDLDPDPTLGWERMIEAAQLTRELLD
ALGLRSWCKTSGGKGLHVVVPLTRHAGWDEAKDFAHAVASHMAGTLPDRFSAKSGPQNRK
GRIFVDYLRNGRGASTIAAFAPRARPGLGVSVPIAWDELQTVTRGDQWNIANLHERLDAQ
RNDPWRDYGKTRQRITAAMWRDLGVKQA
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaagcacaagctcgaacagtatgaatcgaagcggcgcttcgacgaaacgccggagccg
cgcggccagcacgcgcacccgcccgcacgcagcagcgcgcgtcgcggggcgcccagccgc
gcccgcaaagataaggacagcgccgcgttcgtgatccagcggcacgacgcgagtcatctg
cactacgatttcaggctcgaactcgacggcacgctcaagtcgtgggcggtgccgaaaggg
ccgagtctcgatcccacggtcaagcggctcgccgtgcacgtggaggatcatccgctggaa
tatggttcgttcgaagggcgtattccggcggggagttatggcgcgggcacggtcgatatc
tgggaccacggcgtgtggcatcccgaaggcggcatgcgcgccgcgcgcgacgcctatgcg
caaggccggctcaaattcacgctcgatggcgacaagttgcacggcagctgggcgctcgtg
cgcagttcgatgaagagcggtaagcaggacacgtggctgctgatcaagcatcgcgacgcg
gatgccagaagcgaggacgactacaaggtgatcgacgatcgagcggagcatgcgccgaac
aagaaagcgcgcgcgacggcgaaaacttcgaaatcgtcggggggcacgcgtgccgcgtcc
gccgcaaagggcgccaatgacgccaatggcgcgactccgaaggcggaggcgcgcgtggcg
aaagccgccgacgcgaccgcaacggcacgcggcacggcggcgcgcaaggccgtgggcggt
ccgaaagcgcgcggcgccaaggcgatcgaaggcgccagacgcgcggcgctccccgcgacg
ctcgcgccggaactcgccacgcccgccgaagcgccgccgcaaggcgaagactggctctac
gagctcaaatacgacggctatcgcgtgctggcgcgcatcgaccgcagcgcacgcggcgag
ggcgacgtgcgcatctatacgcgcacgggcaacgactggaccgccaaattcccgcgccag
gtgcaggcgctgcgcgcgctcgacgtcgacaaagcgtggctcgacggcgaggccgtcgtg
ctcgacgcgtccggcgtgcccgacttccaggcgctgcaaaacgccttcgacgcaggcagc
cccgacgccatcacgttctggctgttcgacgcgccatggctcgacggcatggatttgcgc
gccgcgccgctcgaagcgcgccgtagcgcgctcgaagcggtgctcgcccgccatacggac
gacgccttgcgcttctccgaagcgttcgagggcgatccggaaacgctgctcgccgccgcc
tgcgaagcgaagctcgaaggcctcgtggcgaagcggcgcgacagccgctacacgtccacg
cggagttcggcgtggctcaagctgcgctgcacgcaacggcaggaattcgtgatcggcggc
tatacggacccggcgggcagccgcgaaggcttcggcgcgctgctgctcggcgtgtacgac
gagcagggcgccttgcaatacgcgggcaaggtcggcacgggattcgacaacgcgcggctc
aagtcgatggcgaaggacctgaaggcgcgcgcaagcaaggcctcgccgttcgccgccgta
ccggccgccgaaacccgcgcccgcgtgcattgggtccaaccgcaactcgtggccgaggtg
cgcttcaagacgtggacgagtgcgggcgtggtgcgtcatgcgtcgtttatcggtttgcga
accgacaagccagcggagaacatcgtgcgcgaacagcaaacggaaaggtcgacggctgct
tcgaaagccgtatcggcgaaagccacctcgtccggagcccgaggccgtgcttcggaatcc
gtaacgatgaagtcgaaagcatcgcgcggcgaaacgcaggttggcggcgtgcgcatcagc
aaccccgaccgcgtgatggacgagcaaagcggcctgcgcaagatcgacctcgtcgaatac
ttcgagtggatcacgccgtggctgctgccgcatttgaagcagcgtccggttgcgctcgcg
cgtacgccgaaaggcgtgggcggcgaactgtttttccagaagcacgcgacgaaactgcaa
attccgcacgccacgcagcacgccgacctcgaccccggccacgagccgctgctcacgctc
gactcggtcaaggcgctcgtgggcgccgcgcaaatggacacgatcgaactgcacacgtgg
aacgcgctcgtcacgagcatcgaaaagcccgatcgcctcgtgttcgacctcgaccccgat
cccacgctgggctgggagcgcatgatcgaggcggcgcaactcacgcgcgaactgctcgac
gcgctcgggctgcgttcgtggtgcaagacgagcggcggcaagggcctgcacgtggtcgtg
ccgctcacgcgtcatgcgggctgggacgaagcgaaggatttcgcgcatgccgtggcgagt
catatggcgggcacgttgcccgaccgcttcagcgcgaagtcggggccgcagaatcgcaaa
ggccgcattttcgtcgactacctgcgcaacgggcgcggcgccagcacgatcgccgcgttc
gcgccgcgcgcgcggccgggcctgggcgtttccgtgccgatcgcgtgggacgaactgcaa
acggtcacgcgcggcgatcagtggaatatcgccaatctgcatgagcggctggacgcgcag
cgcaacgatccctggcgcgactacggcaagacgcgtcagcgcatcacggcagcgatgtgg
cgcgatctgggcgtgaaacaggcgtga
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