KEGG   Paraburkholderia acidisoli: FAZ98_32875
Entry
FAZ98_32875       CDS       T07287                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pacs  Paraburkholderia acidisoli
Pathway
pacs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pacs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FAZ98_32875 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pacs03400]
    FAZ98_32875 (ligD)
Enzymes [BR:pacs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FAZ98_32875 (ligD)
DNA repair and recombination proteins [BR:pacs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FAZ98_32875 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QGZ66560
UniProt: A0A7Z2JKK8
LinkDB
Position
4:complement(883903..886689)
AA seq 928 aa
MKHKLEQYESKRRFDETPEPRGQHAHPPARSSARRGAPSRARKDKDSAAFVIQRHDASHL
HYDFRLELDGTLKSWAVPKGPSLDPTVKRLAVHVEDHPLEYGSFEGRIPAGSYGAGTVDI
WDHGVWHPEGGMRAARDAYAQGRLKFTLDGDKLHGSWALVRSSMKSGKQDTWLLIKHRDA
DARSEDDYKVIDDRAEHAPNKKARATAKTSKSSGGTRAASAAKGANDANGATPKAEARVA
KAADATATARGTAARKAVGGPKARGAKAIEGARRAALPATLAPELATPAEAPPQGEDWLY
ELKYDGYRVLARIDRSARGEGDVRIYTRTGNDWTAKFPRQVQALRALDVDKAWLDGEAVV
LDASGVPDFQALQNAFDAGSPDAITFWLFDAPWLDGMDLRAAPLEARRSALEAVLARHTD
DALRFSEAFEGDPETLLAAACEAKLEGLVAKRRDSRYTSTRSSAWLKLRCTQRQEFVIGG
YTDPAGSREGFGALLLGVYDEQGALQYAGKVGTGFDNARLKSMAKDLKARASKASPFAAV
PAAETRARVHWVQPQLVAEVRFKTWTSAGVVRHASFIGLRTDKPAENIVREQQTERSTAA
SKAVSAKATSSGARGRASESVTMKSKASRGETQVGGVRISNPDRVMDEQSGLRKIDLVEY
FEWITPWLLPHLKQRPVALARTPKGVGGELFFQKHATKLQIPHATQHADLDPGHEPLLTL
DSVKALVGAAQMDTIELHTWNALVTSIEKPDRLVFDLDPDPTLGWERMIEAAQLTRELLD
ALGLRSWCKTSGGKGLHVVVPLTRHAGWDEAKDFAHAVASHMAGTLPDRFSAKSGPQNRK
GRIFVDYLRNGRGASTIAAFAPRARPGLGVSVPIAWDELQTVTRGDQWNIANLHERLDAQ
RNDPWRDYGKTRQRITAAMWRDLGVKQA
NT seq 2787 nt   +upstreamnt  +downstreamnt
atgaagcacaagctcgaacagtatgaatcgaagcggcgcttcgacgaaacgccggagccg
cgcggccagcacgcgcacccgcccgcacgcagcagcgcgcgtcgcggggcgcccagccgc
gcccgcaaagataaggacagcgccgcgttcgtgatccagcggcacgacgcgagtcatctg
cactacgatttcaggctcgaactcgacggcacgctcaagtcgtgggcggtgccgaaaggg
ccgagtctcgatcccacggtcaagcggctcgccgtgcacgtggaggatcatccgctggaa
tatggttcgttcgaagggcgtattccggcggggagttatggcgcgggcacggtcgatatc
tgggaccacggcgtgtggcatcccgaaggcggcatgcgcgccgcgcgcgacgcctatgcg
caaggccggctcaaattcacgctcgatggcgacaagttgcacggcagctgggcgctcgtg
cgcagttcgatgaagagcggtaagcaggacacgtggctgctgatcaagcatcgcgacgcg
gatgccagaagcgaggacgactacaaggtgatcgacgatcgagcggagcatgcgccgaac
aagaaagcgcgcgcgacggcgaaaacttcgaaatcgtcggggggcacgcgtgccgcgtcc
gccgcaaagggcgccaatgacgccaatggcgcgactccgaaggcggaggcgcgcgtggcg
aaagccgccgacgcgaccgcaacggcacgcggcacggcggcgcgcaaggccgtgggcggt
ccgaaagcgcgcggcgccaaggcgatcgaaggcgccagacgcgcggcgctccccgcgacg
ctcgcgccggaactcgccacgcccgccgaagcgccgccgcaaggcgaagactggctctac
gagctcaaatacgacggctatcgcgtgctggcgcgcatcgaccgcagcgcacgcggcgag
ggcgacgtgcgcatctatacgcgcacgggcaacgactggaccgccaaattcccgcgccag
gtgcaggcgctgcgcgcgctcgacgtcgacaaagcgtggctcgacggcgaggccgtcgtg
ctcgacgcgtccggcgtgcccgacttccaggcgctgcaaaacgccttcgacgcaggcagc
cccgacgccatcacgttctggctgttcgacgcgccatggctcgacggcatggatttgcgc
gccgcgccgctcgaagcgcgccgtagcgcgctcgaagcggtgctcgcccgccatacggac
gacgccttgcgcttctccgaagcgttcgagggcgatccggaaacgctgctcgccgccgcc
tgcgaagcgaagctcgaaggcctcgtggcgaagcggcgcgacagccgctacacgtccacg
cggagttcggcgtggctcaagctgcgctgcacgcaacggcaggaattcgtgatcggcggc
tatacggacccggcgggcagccgcgaaggcttcggcgcgctgctgctcggcgtgtacgac
gagcagggcgccttgcaatacgcgggcaaggtcggcacgggattcgacaacgcgcggctc
aagtcgatggcgaaggacctgaaggcgcgcgcaagcaaggcctcgccgttcgccgccgta
ccggccgccgaaacccgcgcccgcgtgcattgggtccaaccgcaactcgtggccgaggtg
cgcttcaagacgtggacgagtgcgggcgtggtgcgtcatgcgtcgtttatcggtttgcga
accgacaagccagcggagaacatcgtgcgcgaacagcaaacggaaaggtcgacggctgct
tcgaaagccgtatcggcgaaagccacctcgtccggagcccgaggccgtgcttcggaatcc
gtaacgatgaagtcgaaagcatcgcgcggcgaaacgcaggttggcggcgtgcgcatcagc
aaccccgaccgcgtgatggacgagcaaagcggcctgcgcaagatcgacctcgtcgaatac
ttcgagtggatcacgccgtggctgctgccgcatttgaagcagcgtccggttgcgctcgcg
cgtacgccgaaaggcgtgggcggcgaactgtttttccagaagcacgcgacgaaactgcaa
attccgcacgccacgcagcacgccgacctcgaccccggccacgagccgctgctcacgctc
gactcggtcaaggcgctcgtgggcgccgcgcaaatggacacgatcgaactgcacacgtgg
aacgcgctcgtcacgagcatcgaaaagcccgatcgcctcgtgttcgacctcgaccccgat
cccacgctgggctgggagcgcatgatcgaggcggcgcaactcacgcgcgaactgctcgac
gcgctcgggctgcgttcgtggtgcaagacgagcggcggcaagggcctgcacgtggtcgtg
ccgctcacgcgtcatgcgggctgggacgaagcgaaggatttcgcgcatgccgtggcgagt
catatggcgggcacgttgcccgaccgcttcagcgcgaagtcggggccgcagaatcgcaaa
ggccgcattttcgtcgactacctgcgcaacgggcgcggcgccagcacgatcgccgcgttc
gcgccgcgcgcgcggccgggcctgggcgtttccgtgccgatcgcgtgggacgaactgcaa
acggtcacgcgcggcgatcagtggaatatcgccaatctgcatgagcggctggacgcgcag
cgcaacgatccctggcgcgactacggcaagacgcgtcagcgcatcacggcagcgatgtgg
cgcgatctgggcgtgaaacaggcgtga

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